Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HPS4	Gene	0	35.91	30.64	30.85	22.93	79.79	10.79	95.94
2	312736	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	398145	Transcript	0	0	0	0	0	0	0	0
4	336873	Transcript	0	0	0	0	0	0	0	0
5	402105	Transcript	0	0.26	0.19	0.75	0.00	0.35	0.00	0.51
6	398141	Transcript	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	0.58	0.00	0.19	0.00	1.54	0.00	0.34
8	E1_Ab	KnownBoundary	0	4.11	1.63	2.21	0.00	9.50	0.00	19.39
9	E1_Da	KnownBoundary	0	5.07	2.21	5.30	2.49	14.09	4.31	5.96
10	ER1b	ExonRegion	0	4.48	2.31	4.52	1.50	20.87	2.62	12.35
11	ER1c	ExonRegion	0	5.71	6.84	8.08	7.47	19.62	3.58	17.41
12	E1b_E2a	KnownJunction	0	1.42	7.99	0.85	7.10	5.26	0.00	4.76
13	ER2a	ExonRegion	0	36.38	44.80	42.22	29.49	76.39	15.53	116.67
14	E2a_E3c	KnownJunction	0	44.71	24.14	35.16	19.48	87.85	5.55	120.00
15	E2a_E4a	NovelJunction	0	4.06	25.06	5.71	23.81	6.48	6.91	5.70
16	ER3a	ExonRegion	0	0.26	0.19	0.75	0.00	0.35	0.00	0.51
17	E3_Ab	KnownBoundary	0	0.93	1.60	0.86	0.00	1.18	0.00	0.00
18	E3_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER3b	ExonRegion	0	2.54	2.20	2.32	0.91	4.92	0.19	5.68
20	ER3c	ExonRegion	0	66.93	23.28	58.55	24.95	141.65	7.11	144.46
21	E3a_E4a	KnownJunction	0	85.54	26.90	66.95	18.45	161.95	6.46	143.56
22	ER4a	ExonRegion	0	90.24	49.40	76.14	31.54	149.52	17.54	158.06
23	E4a_E5a	KnownJunction	0	87.12	48.08	66.81	28.07	166.86	7.66	135.65
24	ER5a	ExonRegion	0	81.63	30.21	66.90	24.49	152.91	13.96	151.30
25	E5a_E6a	KnownJunction	0	79.66	25.48	71.78	30.42	151.13	7.18	154.48
26	ER6a	ExonRegion	0	70.49	45.33	56.77	34.42	125.66	14.88	160.42
27	E6a_E7a	KnownJunction	0	44.95	28.29	28.63	20.02	84.72	7.61	117.78
28	E7_Aa	NovelBoundary	0	11.10	12.45	9.31	12.60	5.19	2.92	3.25
29	ER7a	ExonRegion	0	42.04	34.28	32.52	25.81	84.60	9.90	118.98
30	E7a_E8a	KnownJunction	0	48.77	33.31	27.62	35.71	128.87	8.39	135.09
31	ER8a	ExonRegion	0	31.10	28.71	20.79	26.94	100.18	7.78	97.53
32	E8a_E9a	KnownJunction	0	25.15	14.84	20.19	16.99	82.34	6.27	74.11
33	I8	Intron	0	5.66	3.97	5.69	0.94	17.07	0.25	4.87
34	I8_AR1	ActiveIntronRegion	0	4.32	2.94	5.05	1.92	18.07	0.00	4.71
35	I8_AR2	ActiveIntronRegion	0	7.01	4.64	6.71	0.76	19.16	0.37	5.50
36	ER9a	ExonRegion	0	33.85	21.97	23.96	19.38	87.20	7.95	103.19
37	E9_Da	NovelBoundary	1	9.60	10.32	5.82	1.25	16.44	0.00	9.67
38	E9a_E10a	KnownJunction	0	18.63	17.13	14.59	15.93	23.86	5.65	15.69
39	E9a_E11a	KnownJunction	1	14.79	9.14	6.73	1.63	74.07	0.00	88.75
40	I9	Intron	0	6.90	5.25	3.55	2.35	17.92	0.00	3.78
41	I9_AR1	ActiveIntronRegion	0	6.99	5.30	3.61	2.39	18.16	0.00	3.83
42	E10_Aa	NovelBoundary	0	14.82	9.62	15.10	3.60	37.28	9.81	14.10
43	ER10a	ExonRegion	1	24.01	19.73	23.71	23.30	52.24	4.22	32.52
44	E10_Da	NovelBoundary	0	23.32	9.88	17.14	8.61	40.71	3.86	13.36
45	E10a_E11a	KnownJunction	1	26.54	15.58	23.78	27.88	52.91	3.30	38.14
46	I10	Intron	0	11.30	12.92	9.78	8.35	26.73	4.85	12.01
47	I10_AR1	ActiveIntronRegion	0	11.35	12.97	9.82	8.39	26.83	4.87	12.05
48	E11_Aa	NovelBoundary	0	8.45	11.69	15.81	8.32	26.05	6.22	11.75
49	ER11a	ExonRegion	0	49.11	45.05	35.99	37.79	120.91	10.05	160.49
50	E11a_E12a	KnownJunction	0	39.94	50.89	25.05	40.83	121.10	22.86	148.50
51	ER12a	ExonRegion	0	38.44	44.05	35.74	37.71	123.64	18.29	171.62
52	E12_Da	KnownBoundary	1	30.59	35.49	35.91	29.15	116.19	16.70	129.93
53	E12a_E15b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER12b	ExonRegion	0	37.57	54.48	34.08	37.04	120.10	17.07	152.16
55	E12b_E13a	KnownJunction	1	18.86	38.28	21.91	36.68	110.45	15.89	136.58
56	ER13a	ExonRegion	0	28.69	48.27	33.33	31.90	109.23	13.62	154.48
57	E13a_E14a	KnownJunction	1	30.61	45.27	26.15	40.88	61.50	8.76	123.87
58	ER14a	ExonRegion	0	32.13	38.61	32.17	31.84	93.08	9.77	109.04
59	E14a_E15a	KnownJunction	0	48.60	34.94	51.19	20.07	127.14	13.19	116.18
60	ER15a	ExonRegion	0	55.96	34.00	38.22	20.66	97.50	12.51	92.20
61	E15_Ab	KnownBoundary	0	41.69	37.59	39.26	34.89	48.76	13.67	86.00
62	ER15b	ExonRegion	0	36.64	30.46	31.80	27.58	81.42	9.49	94.11
63	E15_Da	KnownBoundary	0	32.51	25.61	32.07	20.13	46.50	15.46	73.42
64	ER15c	ExonRegion	0	15.38	13.94	20.22	15.30	28.16	8.49	38.39
65	E15_Db	KnownBoundary	0	3.67	1.26	9.36	7.64	7.86	0.00	5.98
66	ER15d	ExonRegion	0	3.11	4.24	3.72	6.82	3.65	1.24	7.58
67	IG1	Intergenic	0	1.25	1.49	4.00	2.41	12.19	0.94	4.40
68	IG1_AR1	ActiveIntergenicRegion	0	2.31	2.51	10.15	5.22	41.52	2.53	13.58