Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CABIN1	Gene	0	68.73	72.04	43.79	37.13	108.14	22.34	54.30
2	263119	Transcript	1	44.88	17.21	31.68	12.86	54.56	5.33	19.18
3	398319	Transcript	0	21.14	12.92	9.59	9.95	26.43	5.17	8.55
4	405822	Transcript	0	0.86	3.11	3.46	2.36	3.18	0.54	2.11
5	337989	Transcript	0	0.27	0.82	0.22	0.97	1.17	0.71	0.23
6	403176	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	0	24.98	10.04	18.01	8.49	26.11	2.75	12.38
8	E1a_E3a	KnownJunction	1	64.77	24.38	45.35	17.23	83.01	7.91	25.98
9	ER2a	ExonRegion	0	15.50	8.42	5.71	4.07	16.36	4.24	7.41
10	E2a_E3a	KnownJunction	1	26.79	17.42	13.47	15.82	36.49	6.11	9.69
11	ER3a	ExonRegion	0	70.17	53.47	49.12	29.34	96.93	22.93	41.52
12	E3a_E4a	KnownJunction	0	47.73	58.16	33.14	23.08	65.70	15.68	33.74
13	ER4a	ExonRegion	0	85.89	76.34	56.03	36.35	76.82	33.66	45.40
14	E4a_E5a	KnownJunction	1	131.10	80.52	82.95	36.74	101.20	27.76	52.40
15	ER5a	ExonRegion	0	66.63	71.69	55.48	23.85	118.42	23.56	46.71
16	E5a_E6a	KnownJunction	0	33.38	48.31	30.16	14.85	52.54	12.03	32.30
17	E5a_E7a	NovelJunction	0	12.65	16.73	5.60	9.21	17.13	12.03	5.35
18	ER6a	ExonRegion	0	49.44	44.65	49.47	20.62	81.24	24.40	46.67
19	E6_Da	NovelBoundary	1	14.97	4.94	12.27	0.00	1.06	1.39	0.89
20	E6a_E7a	KnownJunction	0	31.16	36.15	30.49	11.95	43.57	11.58	39.41
21	ER7a	ExonRegion	0	62.84	74.55	55.11	33.78	106.47	20.04	58.71
22	E7a_E8a	KnownJunction	0	54.26	84.12	44.22	30.15	95.92	34.97	70.35
23	ER8a	ExonRegion	0	66.88	76.53	52.58	42.39	104.05	19.37	54.80
24	E8a_E9a	KnownJunction	0	60.58	76.58	62.55	49.41	144.24	18.14	68.03
25	E8a_E10a	KnownJunction	0	1.72	6.23	4.74	1.68	1.01	1.07	0.60
26	ER9a	ExonRegion	0	67.70	81.46	49.16	38.42	109.79	22.15	56.36
27	E9a_E10a	KnownJunction	0	64.86	84.44	47.75	42.37	82.53	20.45	64.22
28	ER10a	ExonRegion	0	55.42	60.14	32.86	25.25	84.67	11.50	38.19
29	E10a_E11a	KnownJunction	1	75.82	62.26	36.63	24.68	59.02	13.83	21.60
30	ER11a	ExonRegion	0	98.13	72.36	58.47	25.96	94.75	14.32	44.71
31	E11a_E12a	KnownJunction	0	97.32	56.38	66.48	26.74	73.61	14.95	45.01
32	ER12a	ExonRegion	0	71.85	60.08	49.02	32.04	110.32	13.41	56.12
33	E12a_E13a	KnownJunction	0	80.98	69.38	65.30	37.09	122.60	11.47	62.38
34	ER13a	ExonRegion	1	63.31	74.20	40.77	46.01	121.12	10.62	67.80
35	E13a_E14a	KnownJunction	1	74.44	101.17	53.01	59.76	169.16	10.37	77.16
36	ER14a	ExonRegion	1	60.10	95.20	48.45	54.12	135.03	12.45	75.35
37	E14a_E15a	KnownJunction	0	57.65	83.65	40.58	41.91	133.68	12.01	68.98
38	ER15a	ExonRegion	0	75.96	93.84	53.17	39.80	137.78	17.87	71.48
39	E15a_E16a	KnownJunction	0	54.93	81.21	46.90	38.60	128.45	14.53	57.97
40	ER16a	ExonRegion	0	71.44	77.20	48.75	39.09	123.68	12.36	60.37
41	E16a_E17a	KnownJunction	1	56.81	61.69	44.10	33.89	93.41	4.42	56.45
42	ER17a	ExonRegion	0	85.34	70.51	53.09	40.50	119.42	15.82	54.22
43	E17a_E18a	KnownJunction	0	72.20	82.73	46.76	36.82	95.97	21.33	53.16
44	ER18a	ExonRegion	0	80.53	99.92	49.08	50.46	141.58	22.22	74.72
45	E18a_E19a	KnownJunction	0	61.10	109.05	38.60	52.69	119.07	25.67	83.95
46	ER19a	ExonRegion	0	65.20	101.20	48.13	57.41	149.71	24.74	86.52
47	E19a_E20a	KnownJunction	0	87.14	113.26	75.42	55.48	206.46	30.69	90.75
48	ER20a	ExonRegion	0	75.85	84.28	56.88	49.23	155.51	22.55	64.04
49	E20a_E21a	KnownJunction	0	86.12	80.34	53.20	57.08	171.33	25.41	75.23
50	ER21a	ExonRegion	0	79.84	100.14	69.51	55.95	146.64	26.40	77.50
51	E21a_E22a	KnownJunction	0	69.68	107.90	63.11	50.42	130.06	33.37	71.37
52	ER22a	ExonRegion	0	77.72	99.32	74.15	53.28	176.70	32.40	84.26
53	E22a_E23a	KnownJunction	0	52.69	79.13	62.11	52.50	133.15	20.69	62.57
54	ER23a	ExonRegion	0	83.98	92.27	63.40	42.31	170.58	27.60	67.46
55	E23a_E24a	KnownJunction	0	65.06	61.40	36.37	49.12	142.26	15.33	50.27
56	ER24a	ExonRegion	0	65.93	94.55	43.31	39.33	134.34	17.15	71.81
57	E24a_E25a	KnownJunction	1	76.32	63.97	37.98	38.96	93.99	6.11	70.57
58	ER25a	ExonRegion	0	62.19	86.77	42.44	41.93	120.34	21.10	70.44
59	E25a_E26a	KnownJunction	0	65.84	94.45	55.38	58.03	132.16	27.63	41.68
60	ER26a	ExonRegion	0	88.80	81.36	57.93	58.19	126.84	33.63	53.42
61	E26a_E27a	KnownJunction	0	68.70	72.98	40.05	31.62	53.39	29.08	53.73
62	ER27a	ExonRegion	0	55.72	72.02	36.01	32.35	66.77	22.79	41.27
63	E27_Da	KnownBoundary	0	46.55	64.42	32.81	29.20	83.36	20.42	28.02
64	E27a_E28a	KnownJunction	0	0.00	0.00	2.18	3.03	5.35	0.00	3.61
65	ER27b	ExonRegion	0	39.79	56.18	26.99	34.61	70.82	19.86	36.79
66	E27b_E28a	KnownJunction	0	47.60	46.61	37.39	25.55	75.94	10.93	37.20
67	I27	Intron	0	24.49	16.25	11.83	6.50	5.26	2.17	6.29
68	I27_SR1	SilentIntronRegion	1	14.08	15.98	8.25	3.55	3.52	0.92	4.29
69	I27_AR2	ActiveIntronRegion	0	17.58	17.71	9.76	5.49	5.06	2.54	5.79
70	I27_SR2	SilentIntronRegion	0	18.11	12.82	7.96	4.72	4.16	1.29	5.07
71	I27_AR3	ActiveIntronRegion	1	45.93	34.39	19.19	3.82	5.09	1.20	7.59
72	I27_SR3	SilentIntronRegion	0	27.49	13.25	12.89	4.48	5.37	0.00	6.65
73	I27_AR4	ActiveIntronRegion	1	24.88	15.63	12.40	13.42	5.83	2.10	7.99
74	I27_SR4	SilentIntronRegion	1	19.86	20.09	12.40	7.94	3.15	1.80	6.32
75	I27_AR5	ActiveIntronRegion	1	19.60	20.01	7.66	5.09	5.00	1.68	6.47
76	I27_SR5	SilentIntronRegion	0	24.25	16.77	13.78	6.42	4.62	2.41	5.45
77	I27_AR6	ActiveIntronRegion	0	21.13	14.58	7.68	4.78	2.16	2.45	6.07
78	I27_AR7	ActiveIntronRegion	0	19.72	14.17	8.50	3.74	1.62	2.45	5.62
79	I27_AR8	ActiveIntronRegion	0	18.04	13.54	10.39	2.85	2.24	0.00	6.49
80	I27_AR9	ActiveIntronRegion	0	27.05	20.85	13.83	7.88	4.86	2.33	8.05
81	I27_AR10	ActiveIntronRegion	0	31.12	22.04	11.90	7.48	2.02	6.13	5.59
82	I27_AR11	ActiveIntronRegion	0	28.94	18.43	11.18	6.65	3.24	6.13	5.73
83	I27_SR6	SilentIntronRegion	0	32.34	16.19	14.12	7.61	7.11	2.87	7.57
84	E28_Aa	NovelBoundary	1	15.94	20.10	8.12	3.52	5.42	9.73	4.87
85	ER28a	ExonRegion	0	71.65	67.10	53.21	41.19	82.44	20.61	48.78
86	E28a_E29a	KnownJunction	0	103.46	74.06	67.02	37.39	111.02	24.25	60.45
87	ER29a	ExonRegion	0	75.54	77.62	40.31	37.89	96.03	24.12	46.63
88	E29a_E30a	KnownJunction	0	75.05	75.00	33.84	53.23	81.91	20.72	56.21
89	ER30a	ExonRegion	0	76.50	74.95	37.64	39.87	117.44	17.01	55.71
90	E30a_E32a	KnownJunction	0	84.83	55.67	37.55	39.36	130.89	21.25	61.35
91	ER31a	ExonRegion	0	0.27	0.82	0.22	0.97	1.17	0.71	0.23
92	E31a_E32a	KnownJunction	0	0.62	1.63	0.76	1.14	3.30	0.00	0.00
93	ER31b	ExonRegion	0	0.04	2.31	1.35	2.49	2.43	1.23	0.00
94	ER32a	ExonRegion	0	104.09	69.05	48.92	34.51	159.96	30.85	74.13
95	E32a_E33a	KnownJunction	0	142.32	63.39	63.82	39.96	174.53	32.83	106.27
96	ER33a	ExonRegion	0	161.47	117.50	73.32	38.32	150.30	39.27	88.93
97	E33a_E34a	KnownJunction	1	155.22	124.50	73.43	38.12	140.48	33.66	54.33
98	ER34a	ExonRegion	0	67.44	66.55	37.30	31.72	85.49	21.35	45.28
99	E34a_E35a	KnownJunction	0	81.51	80.76	57.57	38.36	145.33	22.54	65.72
100	ER35a	ExonRegion	0	104.44	72.64	73.25	41.74	110.00	34.33	79.81
101	E35_Da	NovelBoundary	0	75.64	44.08	48.66	28.42	61.71	24.20	53.90
102	E35a_E35b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
103	E35b_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
104	E35b_E37a	KnownJunction	0	106.78	63.73	54.19	52.61	122.04	41.14	79.93
105	ER35b	ExonRegion	0	103.89	61.71	68.01	50.13	100.58	39.72	79.87
106	ER35c	ExonRegion	0	103.74	62.89	65.60	48.25	111.26	39.80	80.64
107	E36a_E37b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
108	ER36a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
109	ER37a	ExonRegion	0	104.42	74.65	57.88	50.16	118.06	36.64	73.31
110	ER37b	ExonRegion	0	91.10	80.32	51.83	52.53	131.18	32.24	72.00
111	E37a_E38a	KnownJunction	0	75.14	67.68	37.05	41.45	69.37	33.63	46.48
112	E37a_E39a	KnownJunction	0	0.00	0.00	0.00	3.36	1.01	1.05	2.94
113	E38_Aa	NovelBoundary	1	8.81	23.17	3.88	7.56	8.55	1.05	7.22
114	ER38a	ExonRegion	0	58.87	81.84	32.23	37.29	108.48	33.06	44.30
115	E38a_E39a	KnownJunction	0	78.28	84.17	39.04	29.29	108.65	30.12	53.87
116	ER39a	ExonRegion	0	81.65	84.31	46.50	48.48	120.90	33.93	63.62
117	E39a_E40a	KnownJunction	0	67.01	97.20	39.50	61.71	252.47	43.95	64.12
118	ER40a	ExonRegion	0	79.10	91.44	41.02	50.45	121.44	48.45	63.19
119	E40_Da	KnownBoundary	0	40.52	82.83	22.30	47.11	98.30	45.88	44.20
120	ER40b	ExonRegion	0	57.42	51.55	26.09	32.29	105.15	32.92	37.15
121	ER40c	ExonRegion	0	2.31	2.43	1.35	0.00	8.10	0.00	0.67