Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	BRWD1	Gene	0	83.21	39.03	75.81	30.68	58.83	20.73	32.37
2	341322	Transcript	0	57.99	32.65	64.22	40.81	57.51	25.15	45.25
3	380783	Transcript	0	21.72	16.18	25.12	11.12	12.05	12.02	10.96
4	380800	Transcript	0	0	0	0	0	0	0	0
5	342449	Transcript	0	82.03	27.42	67.60	18.48	63.79	14.98	25.07
6	333229	Transcript	0	0	0	0	0	0	0	0
7	380804	Transcript	0	0.95	2.89	2.59	0.00	0.00	0.00	0.00
8	IG2_AR3	ActiveIntergenicRegion	0	13.01	2.35	0.45	1.62	1.32	0.16	0.09
9	IG2_SR2	SilentIntergenicRegion	0	14.22	2.20	1.09	0.56	0.59	0.00	0.30
10	ER1a	ExonRegion	1	3.50	19.42	2.65	16.87	5.91	4.86	3.70
11	E1a_E2a	KnownJunction	0	13.08	64.47	22.76	51.80	12.70	24.92	8.84
12	ER2a	ExonRegion	0	8.18	48.20	8.69	39.61	7.04	20.61	5.73
13	E2a_E3a	KnownJunction	0	6.04	24.75	6.24	32.10	13.58	23.34	5.50
14	E3a_E4a	KnownJunction	0	22.70	75.00	25.12	60.49	18.40	34.17	33.05
15	ER3a	ExonRegion	0	20.13	66.82	21.16	64.05	18.11	33.63	25.39
16	ER4a	ExonRegion	0	29.15	91.64	39.39	83.34	43.15	33.65	44.13
17	E4a_E5a	KnownJunction	1	36.65	90.06	52.70	96.39	50.23	28.62	48.45
18	E5_Aa	NovelBoundary	1	29.74	2.26	4.34	1.54	6.11	0.00	0.59
19	ER5a	ExonRegion	0	93.97	116.76	95.21	107.92	66.67	56.40	63.09
20	E5_Da	KnownBoundary	0	75.69	46.79	75.31	39.12	49.84	30.55	49.70
21	E5a_E6a	KnownJunction	0	37.27	53.33	56.48	52.42	22.94	21.73	24.42
22	ER5b	ExonRegion	0	57.99	32.65	64.22	40.81	57.51	25.15	45.25
23	E6_Aa	NovelBoundary	1	25.08	1.63	33.83	3.17	3.09	4.69	2.98
24	ER6a	ExonRegion	0	82.36	73.91	82.93	63.96	38.64	33.84	36.55
25	E6a_E7a	KnownJunction	0	97.29	84.15	88.97	67.08	51.78	34.14	39.23
26	ER7a	ExonRegion	0	81.38	69.79	97.83	56.92	45.92	35.24	36.65
27	E7a_E8a	KnownJunction	0	90.88	78.42	85.45	59.87	37.14	28.92	31.89
28	ER8a	ExonRegion	0	70.66	64.87	83.87	48.91	43.29	23.48	29.70
29	E8a_E9a	KnownJunction	1	40.19	31.97	66.97	15.85	33.91	6.27	19.18
30	ER9a	ExonRegion	1	87.75	55.94	93.18	30.36	43.84	12.13	31.00
31	E9a_E10a	KnownJunction	0	114.46	55.20	104.82	35.65	36.31	19.11	29.15
32	ER10a	ExonRegion	1	108.30	68.80	101.60	35.44	47.72	15.66	29.74
33	E10a_E11a	KnownJunction	0	112.54	64.08	103.11	38.52	47.47	19.19	28.30
34	ER11a	ExonRegion	0	136.56	69.16	126.47	37.95	52.89	21.68	32.01
35	E11a_E12a	KnownJunction	1	100.84	54.57	101.45	36.06	47.19	11.52	21.25
36	ER12a	ExonRegion	1	104.88	52.42	102.00	42.12	50.84	10.76	27.41
37	E12a_E13a	KnownJunction	1	85.02	33.57	75.89	36.82	53.64	8.82	23.42
38	ER13a	ExonRegion	1	109.09	58.57	95.90	55.85	50.37	12.62	34.30
39	E13a_E14a	KnownJunction	0	75.05	53.99	97.09	46.00	42.46	16.88	24.08
40	ER14a	ExonRegion	1	110.56	82.40	105.78	58.33	73.39	19.86	45.21
41	E14a_E15a	KnownJunction	1	103.69	87.59	111.80	60.90	64.89	9.35	45.32
42	ER15a	ExonRegion	0	130.51	82.99	127.11	55.74	88.62	37.22	50.73
43	E15a_E16a	KnownJunction	0	138.06	65.21	107.09	49.20	99.27	29.02	53.50
44	ER16a	ExonRegion	0	137.08	77.34	122.69	46.79	71.86	35.16	43.19
45	E16a_E17a	KnownJunction	1	130.13	91.19	111.03	31.72	69.80	47.17	38.97
46	ER17a	ExonRegion	0	110.39	52.75	107.11	34.35	62.74	26.99	40.60
47	E17a_E18a	KnownJunction	0	81.30	52.15	108.14	31.29	41.54	27.68	37.78
48	ER18a	ExonRegion	0	91.48	58.10	101.06	29.79	50.03	24.85	31.05
49	E18a_E19a	KnownJunction	0	69.11	52.94	86.24	22.92	38.84	24.60	22.20
50	ER19a	ExonRegion	0	63.47	53.94	76.29	31.43	51.11	19.96	22.95
51	E19a_E20a	KnownJunction	0	43.31	57.38	70.64	22.97	34.33	15.73	27.36
52	ER20a	ExonRegion	0	74.90	56.23	85.18	26.33	54.95	13.97	29.90
53	E20a_E21a	KnownJunction	0	94.26	59.58	111.49	30.86	77.80	19.99	32.09
54	E20a_E22a	KnownJunction	0	0.95	2.89	2.59	0.00	0.00	0.00	0.00
55	ER21a	ExonRegion	0	125.54	58.26	106.56	47.37	80.85	29.02	38.55
56	E21a_E22a	KnownJunction	0	126.01	56.09	107.95	59.63	57.54	25.94	31.70
57	ER22a	ExonRegion	0	122.25	63.33	98.86	60.22	67.41	30.99	34.18
58	E22a_E23a	KnownJunction	0	125.37	62.21	91.84	51.99	99.70	22.75	30.67
59	ER23a	ExonRegion	0	135.89	49.09	105.56	43.79	74.55	24.65	32.50
60	E23a_E24a	KnownJunction	1	163.33	60.92	119.20	48.36	66.14	30.52	26.54
61	ER24a	ExonRegion	1	185.55	50.42	141.71	46.20	80.27	26.45	33.11
62	E24a_E25a	KnownJunction	0	183.46	38.28	124.96	29.04	56.53	22.89	40.21
63	ER25a	ExonRegion	0	139.28	35.43	113.77	26.72	64.46	24.52	32.36
64	E25_Da	NovelBoundary	0	29.22	2.63	17.39	1.49	10.30	0.00	6.06
65	E25a_E26a	KnownJunction	0	156.58	33.08	122.31	23.57	85.32	22.54	31.64
66	E26_Aa	NovelBoundary	0	24.17	6.36	18.64	0.00	9.34	0.00	3.98
67	ER26a	ExonRegion	0	156.35	41.97	113.97	33.11	91.93	33.12	37.40
68	E26a_E27a	KnownJunction	0	147.07	39.22	119.42	45.84	107.43	28.01	53.79
69	ER27a	ExonRegion	0	185.70	66.60	129.15	50.48	103.37	27.81	60.79
70	E27a_E28a	KnownJunction	0	180.10	63.79	108.45	54.78	97.33	32.64	43.32
71	ER28a	ExonRegion	0	148.58	63.95	100.74	54.78	88.48	32.02	53.41
72	E28a_E29a	KnownJunction	0	135.76	41.11	104.37	42.45	107.66	28.22	56.68
73	ER29a	ExonRegion	0	127.61	36.23	100.36	54.28	89.59	30.14	50.58
74	E29a_E30a	KnownJunction	0	100.94	32.58	87.85	57.22	81.31	33.45	38.38
75	ER30a	ExonRegion	0	74.92	44.74	84.76	43.74	64.95	28.50	38.62
76	E30a_E31a	KnownJunction	0	80.30	46.89	97.96	45.51	67.96	41.67	31.00
77	ER31a	ExonRegion	0	66.43	53.39	84.35	39.55	53.85	33.08	37.04
78	E31a_E32a	KnownJunction	0	63.17	56.54	66.88	35.16	38.31	25.78	27.20
79	ER32a	ExonRegion	0	77.76	39.90	83.38	33.43	57.62	20.76	29.92
80	E32a_E33a	KnownJunction	0	71.47	41.46	76.38	25.63	56.92	13.99	27.06
81	ER33a	ExonRegion	0	90.59	54.74	88.15	32.56	64.71	18.17	29.81
82	E33a_E34a	KnownJunction	0	91.46	50.44	83.68	22.73	59.04	20.26	25.35
83	ER34a	ExonRegion	0	91.86	49.72	88.77	26.36	47.22	25.34	26.98
84	E34a_E35a	KnownJunction	0	48.45	25.43	55.28	21.86	34.28	21.47	22.49
85	E34a_E36a	KnownJunction	0	6.59	2.89	4.40	4.42	0.00	3.19	0.00
86	ER35a	ExonRegion	0	85.60	51.64	87.85	24.47	58.99	20.66	35.04
87	E35a_E36a	KnownJunction	0	76.17	39.49	89.74	18.72	51.25	13.83	28.65
88	I35	Intron	0	17.96	3.33	7.49	0.89	4.46	0.00	1.45
89	I35_SR1	SilentIntronRegion	0	18.01	3.34	7.51	0.89	4.48	0.00	1.45
90	ER36a	ExonRegion	0	86.99	36.18	74.06	18.46	56.74	10.55	23.91
91	E36a_E37a	KnownJunction	1	129.28	32.92	75.13	19.15	73.17	13.72	19.58
92	ER37a	ExonRegion	1	140.22	33.56	86.89	31.89	67.97	27.40	24.54
93	E37a_E38a	KnownJunction	1	84.02	30.42	72.73	34.84	41.77	12.14	13.79
94	ER38a	ExonRegion	0	77.20	37.70	75.20	33.32	45.42	19.18	32.24
95	E38_Da	KnownBoundary	1	24.63	8.85	27.23	17.18	19.87	3.81	11.57
96	E38a_E38b	KnownJunction	0	36.85	29.48	45.84	17.83	24.09	20.85	21.93
97	E38_Ab	KnownBoundary	0	11.55	9.35	14.69	7.83	10.72	6.27	4.18
98	ER38b	ExonRegion	0	58.40	40.09	71.35	35.33	51.02	28.61	29.68
99	ER38c	ExonRegion	0	59.03	46.96	68.65	32.89	45.07	29.35	30.82
100	E38_Db	KnownBoundary	0	48.53	44.40	54.32	32.67	40.83	19.56	23.42
101	ER38d	ExonRegion	0	64.40	56.03	67.74	41.48	56.45	22.19	32.36
102	E38c_E39a	KnownJunction	0	62.82	62.26	61.79	45.73	60.47	17.61	32.80
103	ER39a	ExonRegion	0	75.28	54.11	65.16	38.79	50.85	22.59	29.76
104	E39a_E40a	KnownJunction	0	105.38	51.52	83.95	29.01	49.47	23.40	32.48
105	ER40a	ExonRegion	0	118.86	52.42	108.04	39.89	70.22	23.41	40.87
106	E40a_E41a	KnownJunction	0	166.75	60.53	135.47	47.90	118.17	34.14	41.53
107	ER41a	ExonRegion	0	127.27	73.90	115.25	51.92	103.93	34.84	45.84
108	E41_Da	KnownBoundary	0	107.25	78.42	113.47	36.60	99.50	29.00	43.15
109	E41a_E42a	KnownJunction	0	5.91	2.42	5.16	4.28	7.24	6.19	6.12
110	ER41b	ExonRegion	0	97.12	34.48	75.57	23.96	81.41	20.78	29.21
111	ER41c	ExonRegion	0	99.18	28.90	54.87	15.45	105.14	13.75	20.07
112	ER41d	ExonRegion	0	66.95	20.36	59.63	12.99	46.17	9.19	20.93
113	E41_Dc	NovelBoundary	0	54.28	21.60	57.50	12.00	20.33	4.93	15.91
114	I41	Intron	0	64.70	22.58	67.36	16.16	38.67	12.32	29.44
115	I41_AR1	ActiveIntronRegion	0	64.73	22.59	67.39	16.17	38.69	12.33	29.45
116	E42_Aa	NovelBoundary	0	48.37	23.22	80.89	14.82	51.38	26.37	37.71
117	ER42a	ExonRegion	0	57.66	25.97	54.32	23.40	41.53	23.94	33.40
118	IG1	Intergenic	0	20.87	7.99	16.58	6.77	13.50	7.28	13.90
119	IG1_AR2	ActiveIntergenicRegion	0	26.21	10.17	20.77	8.41	13.83	9.15	17.36