Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DIP2A	Gene	0	60.54	64.05	41.65	77.40	56.74	44.44	78.16
2	400274	Transcript	0	32.88	23.15	18.62	29.29	27.77	21.92	33.12
3	358985	Transcript	0	0.00	2.76	4.14	7.31	0.00	2.79	1.82
4	318711	Transcript	0	4.90	11.66	2.71	6.51	4.22	6.54	9.36
5	IG41_AR1	ActiveIntergenicRegion	0	1.58	0.97	3.70	0.50	10.08	0.49	0.81
6	ER1a	ExonRegion	0	0.10	0.00	0.49	5.81	0.48	3.15	0.50
7	E1_Ab	KnownBoundary	0	0.67	2.57	2.64	10.32	0.00	2.47	2.46
8	ER1b	ExonRegion	0	16.69	29.90	9.02	28.35	7.07	25.26	20.65
9	E1a_E2a	KnownJunction	0	31.59	70.43	24.08	46.27	15.15	55.26	44.14
10	ER2a	ExonRegion	0	49.04	86.76	36.26	85.31	39.26	69.71	65.77
11	E2a_E3a	KnownJunction	0	69.63	107.13	51.26	108.66	34.39	77.34	83.74
12	ER3a	ExonRegion	0	45.09	93.94	38.58	108.85	20.15	64.56	67.63
13	E3a_E4a	KnownJunction	0	31.31	91.45	33.99	86.66	24.41	60.65	67.31
14	ER4a	ExonRegion	0	51.75	109.10	49.92	126.14	54.37	75.27	96.73
15	E4a_E5a	KnownJunction	0	27.94	101.07	28.63	112.92	27.76	71.10	68.38
16	ER5a	ExonRegion	0	25.31	71.11	21.51	64.91	19.39	39.29	44.39
17	E5a_E6a	KnownJunction	0	2.50	5.70	0.68	1.49	0.95	2.65	4.72
18	E5a_E6b	KnownJunction	0	28.64	47.47	17.12	47.92	23.65	30.85	59.83
19	E5a_E7a	KnownJunction	0	0.00	2.76	4.14	7.31	0.00	2.79	1.82
20	ER6a	ExonRegion	0	7.30	17.62	4.74	11.53	7.49	10.42	14.00
21	ER6b	ExonRegion	0	25.03	66.40	25.39	56.45	25.84	28.28	54.90
22	E6a_E7a	KnownJunction	0	30.43	58.87	39.95	75.72	37.99	38.14	69.85
23	ER7a	ExonRegion	0	47.03	81.97	46.59	91.05	36.51	53.85	84.66
24	E7a_E8a	KnownJunction	0	55.01	84.28	59.59	114.00	42.14	65.53	70.31
25	E7a_E8b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E8_Ab	NovelBoundary	0	35.40	47.79	33.93	60.85	15.98	29.27	39.31
27	ER8a	ExonRegion	0	54.32	83.83	60.91	104.36	41.68	58.66	70.88
28	ER8b	ExonRegion	0	64.50	72.06	48.66	82.39	39.65	47.24	74.17
29	E8a_E9a	KnownJunction	0	77.62	71.69	42.00	79.95	44.54	44.73	61.77
30	ER9a	ExonRegion	0	59.49	50.59	50.76	78.90	39.47	42.18	72.96
31	E9a_E10a	KnownJunction	0	47.27	50.60	40.97	92.33	40.11	32.05	71.44
32	ER10a	ExonRegion	0	57.13	62.95	42.36	86.25	37.31	39.99	70.73
33	E10a_E11a	KnownJunction	0	40.42	73.67	40.02	85.80	31.24	38.40	61.63
34	ER11a	ExonRegion	0	42.60	67.81	33.71	74.54	29.22	28.99	57.44
35	E11a_E12a	KnownJunction	0	56.66	72.67	40.25	82.60	28.77	30.20	72.04
36	ER12a	ExonRegion	0	52.41	65.76	34.01	75.06	46.67	33.66	74.43
37	E12a_E13a	KnownJunction	1	80.91	76.84	46.40	71.33	49.68	23.34	71.06
38	E12a_E14a	NovelJunction	0	0.00	6.83	0.00	11.30	0.00	1.37	1.26
39	ER13a	ExonRegion	0	61.19	77.54	45.78	74.21	41.19	36.03	77.85
40	E13a_E14a	KnownJunction	0	40.62	67.49	32.51	77.59	49.13	40.15	75.37
41	ER14a	ExonRegion	0	54.54	76.48	42.31	81.46	55.61	32.67	84.87
42	E14a_E15a	KnownJunction	0	76.61	87.96	53.11	96.69	64.39	34.28	101.01
43	ER15a	ExonRegion	0	52.35	85.85	41.92	95.63	55.76	39.54	91.05
44	E15a_E16a	KnownJunction	0	31.01	71.96	25.42	53.37	33.06	32.29	60.75
45	E15a_E17a	NovelJunction	0	0.65	1.47	1.97	10.02	0.00	3.00	2.15
46	ER16a	ExonRegion	0	38.40	79.55	31.65	81.67	46.18	28.22	77.77
47	E16_Da	NovelBoundary	1	4.31	19.20	4.34	4.71	4.24	1.39	10.49
48	E16a_E17a	KnownJunction	0	41.88	78.58	27.75	80.65	74.76	30.58	83.54
49	ER17a	ExonRegion	0	55.39	77.30	43.16	84.88	65.96	37.40	80.32
50	E17a_E18a	KnownJunction	0	82.13	74.22	52.06	81.33	69.71	43.92	81.37
51	ER18a	ExonRegion	0	106.92	111.45	79.53	112.96	94.26	51.91	134.07
52	E18a_E19a	KnownJunction	0	117.25	136.74	88.66	145.26	104.31	92.75	165.26
53	ER19a	ExonRegion	0	145.09	141.10	100.04	145.04	106.87	72.33	169.83
54	E19a_E20a	KnownJunction	0	112.16	137.82	72.61	122.94	122.99	64.99	186.02
55	ER20a	ExonRegion	0	78.45	106.38	60.13	125.80	79.38	50.08	148.42
56	E20_Da	NovelBoundary	1	9.88	22.30	4.35	8.83	8.51	4.93	17.28
57	E20a_E21a	KnownJunction	0	60.93	78.16	57.24	118.28	51.80	36.02	106.77
58	ER21a	ExonRegion	0	55.81	80.10	42.75	97.92	56.40	30.62	105.80
59	E21a_E22a	KnownJunction	1	48.92	54.67	27.88	89.94	48.43	23.48	93.58
60	ER22a	ExonRegion	0	44.32	69.66	35.88	79.68	42.27	46.43	107.72
61	E22a_E23a	KnownJunction	0	53.83	70.25	44.75	77.26	46.43	49.31	106.10
62	ER23a	ExonRegion	0	49.43	83.47	48.47	92.69	58.56	44.87	118.39
63	E23a_E24a	KnownJunction	0	36.55	87.46	42.35	100.89	55.67	40.84	94.14
64	ER24a	ExonRegion	0	45.45	66.35	42.91	76.81	48.84	44.67	95.02
65	E24a_E25a	KnownJunction	0	58.23	68.33	54.42	97.69	65.95	49.50	137.35
66	ER25a	ExonRegion	0	66.65	63.98	46.39	90.38	76.24	44.85	122.38
67	E25a_E26a	KnownJunction	0	64.89	46.97	37.41	76.69	55.95	42.72	104.99
68	ER26a	ExonRegion	0	55.99	64.96	36.05	86.88	63.17	44.77	104.45
69	E26a_E27a	KnownJunction	0	72.38	60.32	38.21	87.53	86.31	45.72	118.16
70	ER27a	ExonRegion	0	61.03	49.74	34.26	78.94	61.10	37.38	103.48
71	E27a_E28a	KnownJunction	0	41.64	60.95	29.06	86.69	37.90	29.59	81.22
72	ER28a	ExonRegion	0	44.99	57.93	31.96	87.69	45.33	37.36	96.47
73	E28a_E29a	KnownJunction	0	82.93	72.90	49.23	112.48	73.05	51.80	135.02
74	E29_Aa	NovelBoundary	1	30.03	5.81	18.49	13.11	1.94	17.93	3.07
75	ER29a	ExonRegion	0	62.05	56.83	42.39	80.23	52.79	44.76	92.46
76	E29a_E30a	KnownJunction	0	44.88	37.28	29.01	85.26	43.27	51.51	71.38
77	ER30a	ExonRegion	0	42.80	48.45	26.46	77.84	32.98	33.02	59.55
78	E30a_E31a	KnownJunction	0	45.63	50.28	24.17	70.52	28.19	20.50	66.35
79	I30	Intron	1	7.96	5.53	4.26	1.66	5.11	2.89	16.08
80	I30_AR1	ActiveIntronRegion	1	7.99	5.55	4.28	1.66	5.13	2.91	16.14
81	E31_Aa	NovelBoundary	1	19.91	2.94	11.25	2.38	3.09	0.00	4.43
82	ER31a	ExonRegion	0	22.56	55.29	17.39	86.35	29.55	31.08	60.89
83	E31a_E32a	KnownJunction	0	23.90	70.17	16.84	79.27	43.75	24.58	62.01
84	ER32a	ExonRegion	0	26.21	48.72	14.32	64.67	28.47	27.18	57.20
85	E32a_E33a	KnownJunction	0	29.32	43.85	18.39	75.61	29.74	45.56	67.97
86	ER33a	ExonRegion	0	28.72	40.76	19.27	70.39	25.45	37.25	61.48
87	E33a_E34a	KnownJunction	0	28.19	32.29	16.40	67.08	22.08	18.28	55.69
88	ER34a	ExonRegion	1	22.40	31.44	23.22	61.32	32.69	27.94	64.75
89	E34_Da	NovelBoundary	0	13.27	17.47	4.31	16.44	5.23	6.86	7.50
90	E34a_E35a	KnownJunction	1	13.37	32.08	25.19	64.34	33.96	42.69	61.07
91	I34	Intron	0	16.25	15.87	7.84	12.92	7.36	5.88	14.87
92	I34_AR1	ActiveIntronRegion	0	24.67	21.08	12.42	16.97	11.14	7.83	19.01
93	E35_Aa	NovelBoundary	1	16.79	33.76	17.95	23.19	4.20	5.01	16.81
94	ER35a	ExonRegion	0	40.90	61.91	30.29	73.84	41.52	53.08	80.07
95	E35a_E36a	KnownJunction	0	53.27	80.26	38.80	91.81	41.01	67.91	89.69
96	ER36a	ExonRegion	0	36.88	67.57	31.68	79.59	40.43	46.23	78.88
97	E36a_E37a	KnownJunction	0	35.02	80.94	21.34	70.36	71.72	44.81	64.10
98	ER37a	ExonRegion	0	47.75	82.69	35.27	75.98	64.10	52.79	108.78
99	E37a_E38a	KnownJunction	0	55.84	88.80	35.35	97.88	75.82	71.37	124.38
100	ER38a	ExonRegion	0	70.51	57.79	45.53	73.98	77.46	47.98	71.11
101	E38_Da	KnownBoundary	0	196.89	76.95	98.61	108.85	138.06	65.77	126.00
102	ER38b	ExonRegion	0	102.77	45.14	56.86	63.42	86.96	53.70	72.15
103	IG42	Intergenic	0	3.16	2.49	2.61	2.83	3.94	1.12	8.59
104	IG42_SR1	SilentIntergenicRegion	0	3.56	2.87	3.35	3.65	4.57	1.45	10.34