Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PCNT	Gene	0	44.95	12.54	35.45	13.07	47.61	14.01	20.46
2	337772	Transcript	0	124.49	74.16	166.24	84.31	244.94	65.77	122.66
3	359568	Transcript	0	29.41	10.96	39.58	12.38	43.04	13.55	33.90
4	ER1a	ExonRegion	0	13.31	3.17	5.50	4.36	8.58	2.92	3.18
5	E1a_E2a	KnownJunction	0	3.82	9.35	4.96	1.68	4.89	2.65	6.49
6	ER2a	ExonRegion	0	29.78	9.09	27.22	12.82	28.81	10.04	18.38
7	E2a_E3a	KnownJunction	0	25.60	9.35	35.38	10.10	33.82	9.62	21.98
8	ER3a	ExonRegion	0	30.00	11.62	36.43	16.79	46.17	12.95	22.51
9	E3_Da	KnownBoundary	0	67.84	18.55	92.52	32.02	131.59	18.06	43.25
10	E3a_E3b	KnownJunction	0	124.49	74.16	166.24	84.31	244.94	65.77	122.66
11	ER3b	ExonRegion	0	29.41	10.96	39.58	12.38	43.04	13.55	33.90
12	E3_Ab	KnownBoundary	0	41.52	16.58	49.62	23.00	95.51	16.13	42.28
13	ER3c	ExonRegion	0	28.38	17.58	39.85	20.52	56.16	17.62	28.18
14	E3b_E4a	KnownJunction	0	22.01	9.38	34.14	16.36	53.16	20.72	26.48
15	ER4a	ExonRegion	0	18.32	16.51	28.99	15.18	40.52	13.00	21.49
16	E4a_E5a	KnownJunction	0	22.38	22.51	26.30	10.54	41.36	9.27	21.21
17	ER5a	ExonRegion	0	28.22	14.45	25.30	11.98	27.57	6.99	15.28
18	E5a_E6a	KnownJunction	0	50.69	9.27	33.89	19.59	34.12	8.74	16.37
19	E6_Aa	NovelBoundary	1	24.37	0.00	21.18	0.00	0.00	1.42	1.58
20	ER6a	ExonRegion	0	64.04	6.99	50.17	11.69	41.81	10.05	15.54
21	E6a_E7a	KnownJunction	1	56.93	6.23	56.60	8.59	41.15	13.35	12.43
22	ER7a	ExonRegion	0	63.98	10.14	54.18	16.38	37.25	21.99	19.71
23	E7a_E8a	KnownJunction	1	62.85	13.90	56.91	16.34	35.59	19.83	13.47
24	ER8a	ExonRegion	0	59.92	15.40	46.13	11.82	34.55	9.44	15.39
25	E8a_E9a	KnownJunction	1	65.76	6.44	58.44	6.18	49.31	6.89	9.59
26	ER9a	ExonRegion	0	52.73	10.02	35.79	9.59	33.50	4.70	12.64
27	E9a_E10a	KnownJunction	0	50.12	6.54	29.93	8.13	28.72	9.49	12.40
28	ER10a	ExonRegion	0	47.86	9.33	40.09	11.97	35.55	10.17	17.13
29	E10a_E11a	KnownJunction	0	31.78	8.41	34.17	7.42	25.84	7.77	17.97
30	ER11a	ExonRegion	0	36.98	12.21	35.22	11.06	34.42	11.98	17.95
31	E11a_E12a	KnownJunction	0	40.94	9.46	27.43	12.90	29.88	8.95	16.68
32	ER12a	ExonRegion	0	32.15	12.28	25.79	13.22	29.50	8.91	13.20
33	E12a_E13a	KnownJunction	1	57.78	13.77	33.35	16.82	46.87	6.22	6.88
34	ER13a	ExonRegion	1	106.53	17.16	55.18	11.62	56.07	11.40	18.94
35	E13a_E14a	KnownJunction	1	159.34	21.33	82.27	16.04	85.53	10.85	25.42
36	ER14a	ExonRegion	0	61.74	14.36	48.07	13.15	43.61	14.87	22.25
37	E14a_E15a	KnownJunction	1	45.70	8.72	25.29	3.71	23.38	15.41	11.41
38	ER15a	ExonRegion	0	50.79	12.73	29.50	10.12	34.25	10.95	15.69
39	E15a_E16a	KnownJunction	0	46.61	18.52	25.91	19.86	41.52	12.44	12.53
40	ER16a	ExonRegion	0	51.39	16.38	35.93	17.01	47.09	11.66	19.33
41	E16a_E17a	KnownJunction	1	62.19	11.38	32.74	12.11	55.74	13.91	11.09
42	ER17a	ExonRegion	0	44.35	7.32	26.37	11.82	36.57	11.11	14.46
43	E17a_E18a	KnownJunction	1	40.94	3.84	21.74	5.99	33.82	16.64	11.35
44	ER18a	ExonRegion	0	26.33	6.06	20.68	5.85	24.43	8.34	8.34
45	E18a_E19a	KnownJunction	0	21.65	7.49	14.97	4.23	23.81	14.10	10.99
46	ER19a	ExonRegion	0	30.44	7.38	25.98	9.92	21.89	11.59	13.49
47	E19a_E20a	KnownJunction	0	26.09	11.19	26.76	13.92	25.89	8.39	14.02
48	ER20a	ExonRegion	0	23.70	8.66	25.65	9.91	29.35	11.06	15.33
49	E20a_E21a	KnownJunction	0	14.20	10.88	14.84	11.43	15.01	7.16	9.50
50	ER21a	ExonRegion	0	14.48	6.86	14.79	9.42	23.31	6.38	11.70
51	E21a_E22a	KnownJunction	0	18.43	10.59	10.86	8.67	23.28	6.32	12.08
52	ER22a	ExonRegion	0	24.53	8.49	20.69	8.35	28.37	4.23	16.48
53	E22a_E23a	KnownJunction	0	29.39	7.12	29.99	6.39	37.30	4.02	17.67
54	ER23a	ExonRegion	0	21.38	5.79	16.13	7.74	19.48	6.76	8.08
55	E23a_E24a	KnownJunction	1	22.41	1.26	20.54	4.44	5.39	0.00	5.22
56	E24a_E25a	KnownJunction	0	40.91	2.78	23.09	1.41	23.74	9.27	14.99
57	ER24a	ExonRegion	0	42.59	3.93	23.29	4.69	18.24	6.13	13.46
58	ER25a	ExonRegion	0	61.87	12.12	51.83	7.65	42.12	12.94	22.24
59	E25a_E26a	KnownJunction	0	71.12	10.90	52.08	8.48	44.26	12.57	21.37
60	ER26a	ExonRegion	0	66.49	11.01	49.70	9.73	53.89	11.12	20.24
61	E26a_E27a	KnownJunction	1	91.79	17.86	66.98	13.98	49.17	10.29	20.52
62	ER27a	ExonRegion	0	84.41	12.29	67.64	15.35	64.04	12.62	22.41
63	E27a_E28a	KnownJunction	0	52.46	12.14	51.50	21.16	48.16	16.32	16.18
64	ER28a	ExonRegion	0	26.39	9.62	21.13	7.62	24.55	9.29	11.29
65	E28a_E29a	KnownJunction	0	21.56	13.95	22.81	14.17	32.50	26.18	18.30
66	ER29a	ExonRegion	0	20.86	10.87	18.36	13.92	37.96	18.80	17.11
67	E29a_E30a	KnownJunction	1	29.49	7.22	29.57	9.64	60.61	20.74	26.00
68	ER30a	ExonRegion	0	34.47	9.22	40.93	11.24	47.41	13.39	26.36
69	E30a_E31a	KnownJunction	0	43.61	11.85	29.20	9.35	29.88	10.16	20.28
70	ER31a	ExonRegion	0	46.49	7.73	38.39	14.36	40.63	10.34	17.86
71	E31_Da	NovelBoundary	1	20.11	1.37	16.05	0.00	0.00	0.00	0.00
72	E31a_E32a	KnownJunction	0	37.10	9.20	37.05	15.12	45.18	8.39	17.51
73	ER32a	ExonRegion	0	40.90	12.75	31.11	11.37	45.20	13.53	20.83
74	E32a_E33a	KnownJunction	0	31.09	14.92	26.41	16.15	51.06	11.12	22.64
75	ER33a	ExonRegion	0	29.20	14.10	23.55	12.02	51.58	10.83	21.62
76	E33a_E34a	KnownJunction	0	25.12	9.25	21.84	12.30	53.21	7.93	25.37
77	ER34a	ExonRegion	0	28.21	9.54	24.50	16.87	41.22	11.26	22.05
78	E34a_E35a	KnownJunction	0	23.40	9.04	31.76	18.10	46.96	10.83	23.88
79	ER35a	ExonRegion	0	23.13	10.26	23.31	16.06	37.68	7.35	19.32
80	E35a_E36a	KnownJunction	0	30.49	9.59	26.71	13.30	32.94	4.96	19.78
81	ER36a	ExonRegion	0	33.35	14.86	28.43	13.08	49.79	14.93	23.09
82	E36a_E37a	KnownJunction	0	37.14	9.12	35.62	14.20	50.19	20.15	23.60
83	ER37a	ExonRegion	0	26.97	12.09	22.65	9.48	46.82	15.73	18.69
84	E37_Da	NovelBoundary	0	13.90	0.00	8.39	0.00	14.02	0.00	3.54
85	E37a_E38a	KnownJunction	1	8.03	2.84	12.78	2.74	33.80	15.62	12.93
86	ER38a	ExonRegion	0	34.78	15.31	29.65	19.35	59.02	16.63	25.07
87	E38a_E39a	KnownJunction	0	24.37	12.53	12.01	9.21	59.41	9.06	12.28
88	ER39a	ExonRegion	0	21.44	17.32	22.35	10.45	47.56	10.41	19.62
89	E39a_E40a	KnownJunction	0	18.81	14.87	28.58	12.41	44.56	12.06	25.04
90	E40_Aa	NovelBoundary	1	13.95	0.00	13.92	1.68	1.18	0.00	1.69
91	ER40a	ExonRegion	0	37.02	22.01	42.04	12.57	71.31	13.56	32.73
92	E40a_E41a	KnownJunction	0	40.87	28.24	43.90	14.28	56.00	23.64	35.14
93	ER41a	ExonRegion	0	61.57	24.76	53.20	16.04	74.41	32.39	37.38
94	E41a_E42a	KnownJunction	1	56.55	18.47	52.57	10.73	78.89	30.23	35.18
95	ER42a	ExonRegion	0	70.79	17.09	59.07	16.15	85.49	25.04	30.83
96	E42a_E43a	KnownJunction	0	114.18	17.13	60.05	11.84	155.08	22.35	36.26
97	ER43a	ExonRegion	1	173.11	26.54	107.48	30.14	153.38	39.72	39.05
98	E43_Da	NovelBoundary	1	9.51	1.39	12.24	4.71	4.54	0.00	0.00
99	E43a_E44a	KnownJunction	1	201.95	17.55	112.95	23.03	167.46	40.90	36.93
100	E43a_E47a	NovelJunction	1	0.87	1.42	2.13	4.52	2.03	11.93	1.62
101	I43_SR1	SilentIntronRegion	0	13.41	6.42	6.73	3.85	4.68	0.04	0.51
102	E44_Aa	NovelBoundary	1	12.90	6.49	12.29	0.00	7.49	1.02	1.56
103	ER44a	ExonRegion	1	155.17	16.61	71.95	18.25	161.62	33.85	27.77
104	E44_Da	NovelBoundary	1	51.00	8.75	28.11	3.09	30.55	6.03	6.95
105	E44a_E45a	KnownJunction	1	81.28	7.28	32.78	7.42	99.96	12.03	17.56
106	E44a_E47a	NovelJunction	0	16.52	0.00	18.72	1.25	7.79	6.62	8.56
107	I44	Intron	0	19.47	4.07	14.06	6.40	19.80	5.05	8.07
108	I44_AR1	ActiveIntronRegion	0	25.49	4.38	16.08	7.17	26.17	5.86	10.47
109	I44_SR1	SilentIntronRegion	0	10.17	2.33	11.45	2.56	11.02	2.91	5.21
110	E45_Aa	NovelBoundary	1	16.07	4.41	10.53	6.04	9.68	1.02	1.75
111	ER45a	ExonRegion	1	51.39	7.39	26.65	9.23	67.83	20.22	14.94
112	E45a_E46a	KnownJunction	1	45.25	3.89	21.28	10.78	33.70	21.71	13.00
113	I45	Intron	0	8.73	4.94	7.24	4.94	18.64	2.43	5.13
114	I45_AR1	ActiveIntronRegion	0	8.75	4.95	7.26	4.95	18.69	2.44	5.14
115	E46_Aa	NovelBoundary	0	14.97	3.97	9.31	3.82	137.67	0.00	11.34
116	ER46a	ExonRegion	1	82.50	12.21	59.83	20.53	129.82	28.62	30.66
117	E46a_E47a	KnownJunction	0	95.07	21.86	79.01	28.04	97.86	39.99	39.67
118	ER47a	ExonRegion	0	59.95	19.43	42.46	21.94	85.97	28.89	35.72
119	IG41_AR1	ActiveIntergenicRegion	0	1.58	0.97	3.70	0.50	10.08	0.49	0.81