Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C21orf58	Gene	0	1.23	0.78	0.82	0.46	31.31	0.22	1.37
2	397682	Transcript	0	0.00	0.00	0.00	0.00	5.16	0.00	0.00
3	310126	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	291691	Transcript	0	0.00	0.00	0.00	0.00	1.62	0.00	0.00
5	397685	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	397680	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	397683	Transcript	0	0.50	0.06	0.00	0.39	8.32	0.18	0.24
8	397679	Transcript	0	0.52	0.80	0.22	0.14	19.46	0.10	0.56
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	2.43	0.00	0.00
10	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	5.92	0.00	0.00
11	ER1c	ExonRegion	0	0.94	1.28	1.07	0.31	27.47	0.46	1.62
12	E1_Da	KnownBoundary	0	3.37	0.00	2.41	1.63	58.23	1.55	1.62
13	E1a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER1d	ExonRegion	0	2.77	1.66	2.46	0.69	73.20	0.28	2.77
15	E1_Db	NovelBoundary	0	0.00	1.47	2.27	0.00	27.25	4.90	0.69
16	E1b_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	2.95	0.00	0.00
17	I1	Intron	0	1.48	0.64	1.18	0.00	38.04	0.42	1.53
18	I1_AR1	ActiveIntronRegion	0	1.73	0.75	1.39	0.00	44.49	0.49	1.79
19	E2_Aa	NovelBoundary	0	0.00	1.42	1.67	0.00	13.02	1.29	0.66
20	ER2a	ExonRegion	0	0.61	0.00	0.00	0.00	27.17	0.46	0.27
21	E2_Da	NovelBoundary	0	0.73	0.00	0.00	3.36	12.56	0.00	0.86
22	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	2.19	0.00	0.00
23	I2	Intron	0	0.36	0.94	0.10	0.00	14.75	0.00	0.72
24	I2_SR1	SilentIntronRegion	0	0.46	0.88	0.13	0.00	13.54	0.00	0.69
25	I2_AR1	ActiveIntronRegion	0	0.00	1.17	0.00	0.00	19.19	0.00	0.83
26	E3_Aa	NovelBoundary	0	1.03	1.50	0.00	0.00	17.77	2.71	0.00
27	ER3a	ExonRegion	0	0.52	0.80	0.22	0.14	19.46	0.10	0.56
28	E3_Ab	KnownBoundary	0	0.68	0.00	0.00	1.63	11.83	0.00	0.00
29	ER3b	ExonRegion	0	1.73	0.89	0.91	0.26	41.16	0.00	2.28
30	E3a_E4a	KnownJunction	0	0.92	0.00	0.00	0.00	12.84	0.00	0.89
31	E3a_E4b	KnownJunction	0	0.58	0.00	0.79	0.00	18.74	0.00	1.28
32	ER4a	ExonRegion	0	0.46	1.14	0.43	0.72	13.33	0.00	1.44
33	E4_Ab	KnownBoundary	0	0.92	0.00	0.83	1.65	14.29	0.00	0.77
34	ER4b	ExonRegion	0	0.70	0.63	0.80	0.60	48.25	0.00	2.37
35	E4a_E5a	KnownJunction	0	0.58	2.44	0.76	0.00	52.54	0.00	3.96
36	ER5a	ExonRegion	0	1.87	1.99	0.49	0.00	49.84	0.00	3.17
37	E5a_E6a	KnownJunction	0	1.80	0.00	0.00	0.00	11.50	0.00	5.03
38	E5a_E6b	KnownJunction	0	1.64	0.00	0.00	0.00	23.95	0.00	0.00
39	ER6a	ExonRegion	0	0.64	0.00	1.06	0.07	15.84	0.55	1.21
40	E6_Ab	KnownBoundary	0	2.04	0.00	0.89	1.06	22.94	0.00	1.61
41	ER6b	ExonRegion	0	2.03	0.50	1.14	1.07	48.20	0.44	2.20
42	E6a_E8a	KnownJunction	0	1.49	0.97	2.57	0.00	95.16	1.23	3.07
43	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER8a	ExonRegion	0	2.70	0.09	0.91	0.02	66.49	0.19	2.27
45	E8a_E9a	KnownJunction	0	1.72	0.00	1.74	0.00	46.54	0.00	3.15
46	ER9a	ExonRegion	0	2.81	1.00	1.96	0.00	57.25	0.00	4.37
47	E9_Da	NovelBoundary	0	0.98	0.00	0.00	0.00	12.19	0.00	0.00
48	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	9.57	0.00	0.53
49	I9	Intron	0	0.18	0.83	0.46	0.00	13.81	0.28	0.62
50	I9_SR1	SilentIntronRegion	0	0.18	0.83	0.47	0.00	13.89	0.28	0.63
51	ER10a	ExonRegion	0	0.63	0.00	0.13	0.00	31.50	0.00	1.22
52	E10_Da	KnownBoundary	0	1.62	0.00	0.88	0.00	25.34	0.00	1.66
53	E10a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	7.88	0.00	0.00
54	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER10b	ExonRegion	0	0.47	0.00	0.37	0.00	18.52	0.00	0.84
56	E10_Ab	KnownBoundary	0	1.03	0.00	1.74	0.00	30.75	0.00	1.38
57	ER10c	ExonRegion	0	1.48	0.83	1.06	1.02	31.01	0.17	0.89
58	ER10d	ExonRegion	0	0.00	0.00	0.00	0.00	3.18	0.00	0.00
59	ER10e	ExonRegion	0	0.00	0.00	0.00	0.00	1.62	0.00	0.00
60	ER11a	ExonRegion	0	1.38	0.25	0.00	1.56	3.93	0.26	0.70
61	E11_Da	NovelBoundary	0	102.81	36.15	77.71	23.98	36.58	32.19	26.97
62	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00