Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RRP1	Gene	0	70.26	75.44	114.97	121.78	79.53	64.45	63.22
2	400387	Transcript	0	54.45	63.28	87.90	104.49	52.77	61.46	52.17
3	291569	Transcript	0	3.17	2.98	4.66	6.26	2.64	2.92	2.79
4	ER1a	ExonRegion	0	0.28	0.00	0.05	0.70	0.00	0.00	0.00
5	ER1b	ExonRegion	0	60.71	55.55	78.14	95.24	80.11	55.75	47.79
6	E1a_E2a	KnownJunction	0	132.27	134.69	199.32	228.38	84.70	146.73	121.09
7	E2_Aa	NovelBoundary	1	61.09	0.00	92.23	0.00	2.33	0.00	0.00
8	ER2a	ExonRegion	0	158.46	161.94	282.22	267.59	197.25	152.45	137.30
9	E2a_E3a	KnownJunction	0	124.84	171.79	293.95	242.09	348.05	155.55	155.47
10	ER3a	ExonRegion	0	130.20	184.11	319.87	251.54	270.24	164.03	179.00
11	E3a_E4a	KnownJunction	0	156.35	178.25	332.92	257.18	142.40	171.63	176.13
12	ER4a	ExonRegion	0	176.42	180.35	324.73	284.92	171.81	156.80	159.70
13	E4a_E5a	KnownJunction	0	184.61	141.18	349.80	231.71	228.52	119.71	148.93
14	ER5a	ExonRegion	0	209.08	155.91	407.60	266.05	256.89	141.40	190.25
15	E5a_E6a	KnownJunction	0	225.26	165.93	434.56	309.92	242.82	196.44	215.36
16	ER6a	ExonRegion	0	179.55	176.81	352.32	296.43	238.87	157.71	179.07
17	E6a_E7a	KnownJunction	0	200.16	199.61	358.42	329.75	195.03	156.83	177.12
18	ER7a	ExonRegion	0	208.85	191.18	368.73	314.68	238.62	162.13	167.44
19	E7a_E8a	KnownJunction	0	205.57	186.00	356.05	308.05	259.78	159.49	158.38
20	ER8a	ExonRegion	0	122.63	147.32	234.26	266.95	181.80	109.74	136.01
21	E8a_E9a	KnownJunction	0	94.55	105.85	160.34	192.18	135.62	92.67	95.72
22	I8_SR2	SilentIntronRegion	0	18.73	8.81	11.26	6.23	1.62	1.53	2.28
23	ER9a	ExonRegion	0	62.86	121.94	120.63	191.63	107.45	92.38	91.22
24	E9a_E10a	KnownJunction	0	56.40	131.36	111.93	234.15	92.95	102.83	101.54
25	ER10a	ExonRegion	0	88.97	120.83	180.70	226.95	103.66	113.67	106.23
26	E10a_E11a	KnownJunction	0	75.91	86.07	138.21	155.18	85.66	80.75	66.81
27	E10a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E11a_E12b	KnownJunction	0	62.75	82.60	101.60	135.18	66.16	90.66	74.32
29	ER11a	ExonRegion	0	97.44	125.07	169.65	210.24	94.51	121.07	105.34
30	ER12a	ExonRegion	0	6.33	5.96	9.32	12.53	5.28	5.84	5.59
31	ER12b	ExonRegion	0	86.44	103.36	150.06	203.27	88.71	115.12	89.63
32	E12_Da	NovelBoundary	1	23.03	23.72	32.82	23.54	18.00	4.96	22.14
33	E12a_E13a	KnownJunction	0	75.97	86.14	138.42	150.95	74.41	72.90	66.21
34	I12	Intron	1	11.18	13.71	15.58	13.11	15.20	4.41	14.19
35	I12_AR1	ActiveIntronRegion	1	13.77	14.16	21.03	13.37	17.79	2.29	18.39
36	I12_AR3	ActiveIntronRegion	1	10.80	14.61	14.24	13.84	14.95	5.51	13.40
37	ER13a	ExonRegion	0	37.58	69.01	64.58	118.81	46.80	59.30	44.85
38	E13_Da	KnownBoundary	0	2.82	1.63	11.01	6.10	1.18	6.22	5.09
39	ER13b	ExonRegion	1	35.88	22.68	29.97	21.16	17.52	14.80	14.39
40	IG50	Intergenic	0	9.97	5.58	14.75	6.65	8.66	4.27	6.68
41	IG50_AR1	ActiveIntergenicRegion	0	10.18	5.69	15.03	6.75	8.80	4.38	6.83