Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PDXK	Gene	0	97.66	110.28	97.04	93.39	64.31	77.22	138.75
2	398081	Transcript	0	0.00	2.13	0.00	4.36	0.00	0.92	0.51
3	291565	Transcript	0	0	0	0	0	0	0	0
4	343528	Transcript	0	0.88	5.46	2.23	9.56	0.00	4.45	3.08
5	398085	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	327574	Transcript	0	11.58	8.20	6.65	7.28	4.02	9.64	5.35
7	398078	Transcript	0	0.19	0.30	0.17	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	0.00	2.13	0.00	4.36	0.00	0.92	0.51
9	ER1b	ExonRegion	1	0.49	18.25	0.00	27.94	0.00	6.00	3.67
10	E1_Ac	KnownBoundary	0	0.00	7.67	0.00	11.70	0.00	3.32	2.58
11	E1_Ad	KnownBoundary	0	1.79	54.33	0.00	44.16	0.00	21.76	14.88
12	ER1c	ExonRegion	0	1.54	52.57	0.00	56.57	0.00	24.85	18.09
13	ER1d	ExonRegion	1	24.87	160.78	27.38	111.86	21.07	103.27	93.91
14	E1a_E3a	NovelJunction	0	7.93	16.31	3.29	13.41	0.92	17.37	1.61
15	E1a_E4a	KnownJunction	0	101.11	373.92	113.05	228.59	90.27	256.34	293.02
16	E1a_E7a	NovelJunction	1	0.00	8.96	0.00	0.00	0.00	4.21	0.00
17	I1_SR2	SilentIntronRegion	0	20.00	14.44	22.92	9.97	1.34	5.25	13.66
18	ER2a	ExonRegion	0	3.22	2.07	3.66	0.95	9.69	0.20	4.39
19	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER3a	ExonRegion	1	37.61	27.62	22.94	22.19	5.35	23.79	15.30
21	E3a_E4a	KnownJunction	1	5.49	3.13	0.00	5.96	1.04	14.55	1.69
22	I3_AR1	ActiveIntronRegion	1	29.50	9.97	8.93	3.15	3.15	2.23	7.95
23	E4_Aa	NovelBoundary	1	58.20	8.41	60.36	2.98	1.11	7.50	13.79
24	ER4a	ExonRegion	0	161.44	436.22	169.23	269.25	173.38	277.90	402.83
25	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E4a_E7a	KnownJunction	0	199.63	435.50	179.37	270.45	228.13	263.90	411.74
27	ER5a	ExonRegion	0	0.19	0.41	0.25	0.44	0.24	0.15	0.24
28	ER6a	ExonRegion	0	0.38	0.60	0.34	0.00	0.00	0.00	0.00
29	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER7a	ExonRegion	0	348.15	656.14	298.13	427.64	278.37	391.10	611.15
31	E7a_E8a	KnownJunction	0	407.23	728.03	366.04	482.14	241.89	411.27	746.90
32	E7a_E9a	KnownJunction	0	0.88	5.46	2.23	9.56	0.00	4.45	3.08
33	ER8a	ExonRegion	0	359.59	710.65	340.08	480.20	292.32	416.96	724.16
34	E8_Da	NovelBoundary	1	19.71	7.72	15.75	10.67	1.08	23.07	4.90
35	E8a_E9a	KnownJunction	0	314.24	600.41	267.72	383.28	287.26	336.50	664.61
36	E8a_E10a	NovelJunction	1	1.03	13.11	0.00	0.00	0.00	0.00	0.00
37	ER9a	ExonRegion	0	417.02	688.88	317.62	453.89	325.75	391.72	781.34
38	E9a_E10a	KnownJunction	0	413.24	638.71	326.08	435.98	345.29	388.44	682.23
39	ER10a	ExonRegion	0	399.78	666.69	338.45	411.09	377.99	381.11	699.12
40	E10a_E11a	KnownJunction	0	285.50	485.86	235.30	302.80	321.49	254.76	536.60
41	ER11a	ExonRegion	0	316.60	606.98	269.63	380.87	320.37	336.72	725.14
42	E11a_E12a	KnownJunction	0	286.83	616.35	253.10	391.68	387.10	344.51	735.06
43	ER12a	ExonRegion	0	287.91	545.85	228.36	350.43	289.05	311.07	638.75
44	E12a_E13a	KnownJunction	0	310.75	593.13	277.52	405.45	283.43	332.53	662.46
45	ER13a	ExonRegion	0	286.49	642.82	249.93	442.34	261.53	371.85	729.26
46	E13a_E14a	KnownJunction	0	251.13	640.79	236.54	432.16	264.19	357.19	696.75
47	E13a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER14a	ExonRegion	0	258.97	674.54	239.98	389.09	230.47	376.49	700.72
49	E14a_E15a	KnownJunction	0	264.24	549.76	213.11	361.83	189.15	360.24	570.26
50	ER15a	ExonRegion	0	161.17	335.52	161.39	235.77	110.40	198.96	357.53
51	E15_Da	KnownBoundary	0	108.85	137.11	135.91	139.57	54.15	74.40	191.63
52	ER15b	ExonRegion	0	112.14	83.88	117.37	89.02	65.82	69.41	128.51
53	ER15c	ExonRegion	0	0.00	1.21	0.00	0.00	0.00	0.00	0.00
54	IG48	Intergenic	0	9.65	8.36	6.91	7.59	1.57	6.54	8.15
55	IG48_SR1	SilentIntergenicRegion	0	7.41	8.15	4.33	6.80	0.49	5.37	7.53
56	IG48_AR1	ActiveIntergenicRegion	0	21.58	9.47	20.60	11.80	7.31	12.73	11.43