Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PDE9A	Gene	0	91.31	57.83	48.45	57.40	166.07	28.30	17.09
2	398265	Transcript	0	0	0	0	0	0	0	0
3	335512	Transcript	0	0	0	0	0	0	0	0
4	291539	Transcript	0	0	0	0	0	0	0	0
5	380328	Transcript	0	6.61	4.34	5.41	3.37	7.87	2.88	1.77
6	328862	Transcript	0	0	0	0	0	0	0	0
7	398232	Transcript	0	0	0	0	0	0	0	0
8	398225	Transcript	0	0	0	0	0	0	0	0
9	335440	Transcript	0	0	0	0	0	0	0	0
10	349112	Transcript	0	0	0	0	0	0	0	0
11	398236	Transcript	0	0	0	0	0	0	0	0
12	398227	Transcript	0	0.00	4.44	0.00	1.68	0.00	0.00	0.00
13	398229	Transcript	0	0	0	0	0	0	0	0
14	398234	Transcript	0	0	0	0	0	0	0	0
15	398224	Transcript	0	0	0	0	0	0	0	0
16	398217	Transcript	0	5.76	8.91	4.85	8.52	7.15	4.89	1.91
17	ER1a	ExonRegion	0	4.36	4.38	2.64	8.02	12.96	1.62	2.43
18	ER1b	ExonRegion	1	15.69	17.76	11.38	31.36	83.63	9.09	7.64
19	E1_Ac	KnownBoundary	1	24.50	28.82	20.03	54.45	138.04	17.15	11.68
20	ER1c	ExonRegion	1	22.77	34.71	18.68	46.80	85.66	12.56	11.25
21	E1a_E2a	KnownJunction	0	18.69	16.08	17.93	35.84	34.37	12.52	6.32
22	E1a_E3b	KnownJunction	0	0.62	6.73	0.00	1.00	0.00	1.66	0.00
23	E1a_E5a	KnownJunction	0	0.00	2.84	0.70	2.93	2.03	0.00	0.00
24	E1a_E8a	KnownJunction	0	0.00	4.44	0.00	1.68	0.00	0.00	0.00
25	ER2a	ExonRegion	0	26.73	25.27	22.82	39.78	36.74	23.73	8.32
26	E2a_E3b	KnownJunction	0	34.16	43.82	30.19	52.07	37.41	24.90	11.84
27	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	1.30	0.00	1.02	0.00
28	ER3a	ExonRegion	0	11.53	17.82	9.71	17.04	14.31	8.58	3.82
29	ER3b	ExonRegion	0	40.71	51.84	35.02	52.05	81.05	17.74	15.24
30	E3a_E4a	KnownJunction	0	6.04	7.83	3.59	1.35	5.39	3.54	2.12
31	E3a_E5a	KnownJunction	0	38.52	31.47	29.83	31.83	125.68	15.76	13.64
32	E3a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
33	ER4a	ExonRegion	0	8.24	3.88	7.29	3.95	8.64	2.26	1.78
34	E4a_E5a	KnownJunction	0	5.56	1.31	5.35	4.80	9.57	2.84	1.39
35	ER5a	ExonRegion	0	48.80	45.28	36.27	41.55	135.23	14.68	16.86
36	E5a_E6a	KnownJunction	0	13.22	25.64	8.58	14.58	44.28	9.19	7.07
37	E5a_E7a	KnownJunction	0	27.71	9.27	24.07	5.69	45.60	1.47	8.07
38	E5a_E8a	KnownJunction	1	3.12	1.26	1.47	13.03	3.11	3.27	0.00
39	ER6a	ExonRegion	0	27.66	40.81	16.69	25.65	49.44	18.40	3.40
40	E6a_E7a	KnownJunction	0	49.29	43.69	17.19	34.60	84.05	18.47	5.53
41	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.21	0.00
42	ER7a	ExonRegion	0	83.82	69.31	66.29	63.14	169.45	24.77	20.56
43	E7a_E8a	KnownJunction	0	87.37	77.00	70.01	63.72	195.14	33.55	24.09
44	ER8a	ExonRegion	0	105.70	86.55	79.20	81.23	165.65	51.56	27.88
45	E8a_E9a	KnownJunction	0	98.87	88.19	72.04	75.02	145.90	54.16	20.44
46	ER9a	ExonRegion	0	105.09	94.90	83.13	64.23	190.84	43.47	24.72
47	E9a_E10a	KnownJunction	0	106.77	83.33	83.10	66.10	217.18	44.89	26.33
48	ER10a	ExonRegion	0	114.77	96.58	83.36	59.75	238.77	49.67	30.76
49	E10a_E11a	KnownJunction	0	93.76	78.00	70.77	55.97	173.47	35.05	21.57
50	ER11a	ExonRegion	0	79.88	77.46	66.40	61.17	209.06	34.88	27.00
51	E11a_E12a	KnownJunction	0	84.94	82.15	76.31	61.33	304.02	31.14	32.82
52	ER12a	ExonRegion	0	125.90	80.36	81.75	76.12	326.57	39.99	28.22
53	E12a_E13a	KnownJunction	0	155.82	86.43	84.94	80.76	283.94	50.06	31.10
54	ER13a	ExonRegion	0	125.53	92.69	71.16	71.59	227.33	41.65	25.76
55	E13_Da	NovelBoundary	0	9.23	10.82	4.20	9.37	0.92	17.50	0.00
56	E13a_E14a	KnownJunction	0	90.56	64.81	47.52	68.73	183.66	29.85	22.07
57	ER14a	ExonRegion	0	124.80	101.93	62.24	101.44	285.56	42.07	26.52
58	E14a_E15a	KnownJunction	0	128.50	75.11	59.46	78.37	292.86	39.42	23.75
59	ER15a	ExonRegion	0	178.12	69.26	57.94	76.87	283.22	31.21	22.12
60	E15a_E16a	KnownJunction	0	196.41	77.19	59.94	94.68	277.95	53.60	23.55
61	ER16a	ExonRegion	1	322.68	99.12	104.16	123.84	387.51	55.93	29.24
62	E16a_E17a	KnownJunction	0	236.38	62.47	99.36	103.49	314.90	45.83	29.32
63	E16a_E18a	NovelJunction	1	8.66	1.58	3.55	8.53	2.03	13.29	0.00
64	ER17a	ExonRegion	0	195.60	59.57	87.79	86.99	295.83	29.49	26.51
65	E17a_E18a	KnownJunction	0	139.43	45.76	63.83	41.18	231.04	21.49	18.04
66	E18_Aa	NovelBoundary	1	30.04	0.00	16.37	0.00	3.25	0.00	0.00
67	ER18a	ExonRegion	0	101.31	56.28	49.99	54.36	188.14	27.96	18.56
68	E18a_E19a	KnownJunction	0	59.50	48.97	35.18	57.57	144.15	28.94	19.12
69	ER19a	ExonRegion	0	53.46	46.99	39.22	61.50	137.57	25.63	14.90
70	E19a_E20a	KnownJunction	0	50.30	54.07	35.84	45.76	91.50	23.96	12.08
71	ER20a	ExonRegion	0	29.90	48.42	23.90	55.19	83.07	27.93	9.67
72	E20a_E21a	KnownJunction	1	27.57	46.84	15.19	54.37	89.21	20.18	11.14
73	ER21a	ExonRegion	0	14.76	17.50	9.30	22.35	39.94	11.53	3.73
74	ER21b	ExonRegion	0	1.28	0.00	0.68	0.00	8.10	0.00	0.67
75	IG34_AR5	ActiveIntergenicRegion	0	5.01	6.07	9.41	8.09	3.87	2.88	4.50
76	IG34_SR5	SilentIntergenicRegion	0	5.06	6.26	10.66	9.12	7.04	2.86	8.66
77	IG34_AR6	ActiveIntergenicRegion	0	3.25	6.20	9.94	10.39	16.96	1.39	10.10
78	IG34_SR6	SilentIntergenicRegion	0	4.79	8.26	12.83	9.36	32.61	3.19	16.61