Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MRPL39	Gene	0	59.97	110.42	140.30	100.48	216.08	96.11	132.39
2	307301	Transcript	0	0.54	0.33	0.92	1.06	0.47	5.06	0.55
3	352957	Transcript	1	10.16	63.31	35.57	50.20	77.23	44.89	58.04
4	IG42_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.07	1.43	0.71	17.35	0.39
5	IG42_SR2	SilentIntergenicRegion	0	0.00	0.40	0.45	0.64	0.32	8.65	0.00
6	ER1a	ExonRegion	0	50.67	83.18	101.62	79.95	200.87	51.75	101.86
7	E1a_E2a	KnownJunction	0	36.38	95.05	67.99	78.08	41.56	52.93	75.91
8	ER2a	ExonRegion	0	58.22	128.13	133.32	108.31	180.61	85.83	130.90
9	E2a_E3a	KnownJunction	0	37.89	98.65	113.40	78.62	345.68	79.03	123.14
10	E2a_E4a	NovelJunction	0	0.00	8.30	0.82	21.05	8.32	13.61	0.00
11	ER3a	ExonRegion	0	49.94	115.31	136.93	98.00	218.67	112.01	135.51
12	E3a_E4a	KnownJunction	0	76.06	128.07	177.55	154.26	262.09	138.96	191.42
13	ER4a	ExonRegion	0	87.58	125.40	212.66	140.13	336.41	127.83	195.73
14	E4_Da	NovelBoundary	1	0.00	2.00	0.68	2.44	0.00	30.71	0.67
15	E4a_E5a	KnownJunction	0	115.73	127.63	244.57	131.80	357.66	105.64	194.29
16	I4	Intron	1	1.33	0.80	1.09	1.65	0.81	23.23	0.83
17	I4_SR1	SilentIntronRegion	1	1.34	0.80	1.09	1.65	0.81	23.27	0.83
18	E5_Aa	NovelBoundary	1	5.41	0.00	2.40	6.26	0.00	31.95	1.99
19	ER5a	ExonRegion	0	105.00	152.04	227.28	149.51	333.80	120.11	206.03
20	E5_Da	NovelBoundary	1	2.59	2.60	1.49	0.00	0.00	39.05	0.00
21	E5a_E6a	KnownJunction	0	95.73	164.96	194.22	166.56	390.68	103.31	180.33
22	I5	Intron	1	0.59	1.51	1.08	1.45	0.30	19.97	0.68
23	I5_SR1	SilentIntronRegion	1	0.69	2.23	0.85	1.56	0.32	27.87	0.34
24	ER6a	ExonRegion	0	127.22	165.37	281.14	165.16	445.96	142.13	230.17
25	E6a_E7a	KnownJunction	0	116.21	177.62	244.73	143.88	311.72	131.99	205.58
26	I6	Intron	1	0.39	1.16	0.55	3.05	0.29	25.75	0.58
27	I6_SR1	SilentIntronRegion	1	0.40	1.16	0.55	3.06	0.29	25.81	0.58
28	E7_Aa	NovelBoundary	1	2.79	4.02	2.04	5.91	0.00	67.46	0.60
29	ER7a	ExonRegion	0	88.81	176.43	193.14	141.78	268.56	135.38	188.11
30	E7_Da	NovelBoundary	1	1.84	1.63	2.72	4.12	1.13	31.57	1.35
31	E7a_E8a	KnownJunction	0	64.96	160.86	155.21	134.32	270.96	134.19	164.40
32	I7	Intron	1	3.11	3.98	4.05	5.00	1.69	60.51	2.64
33	I7_SR1	SilentIntronRegion	1	3.69	3.22	4.95	4.93	1.58	66.28	2.64
34	I7_AR1	ActiveIntronRegion	1	2.09	7.64	3.68	7.48	4.86	50.44	3.18
35	I7_SR2	SilentIntronRegion	1	2.16	5.22	2.53	5.10	1.82	51.21	2.66
36	E8_Aa	NovelBoundary	1	2.55	4.86	1.70	2.52	3.37	46.07	1.30
37	ER8a	ExonRegion	0	58.90	126.96	144.66	114.15	223.22	139.94	139.13
38	E8_Da	NovelBoundary	1	1.85	2.52	1.35	3.03	1.15	54.81	2.19
39	E8a_E9a	KnownJunction	0	25.42	66.23	45.30	40.42	107.31	57.70	66.47
40	I8	Intron	1	1.25	4.30	2.80	4.01	2.27	45.52	1.60
41	I8_SR1	SilentIntronRegion	1	1.34	4.40	2.66	3.36	1.87	49.71	1.68
42	I8_AR1	ActiveIntronRegion	1	1.07	4.12	3.11	5.42	3.11	36.89	1.46
43	E9_Aa	NovelBoundary	1	0.00	1.44	2.64	8.29	0.95	36.13	0.89
44	ER9a	ExonRegion	0	19.34	66.51	45.99	46.76	86.77	52.39	74.39
45	E9_Da	NovelBoundary	1	8.95	1.29	23.08	5.80	4.36	53.09	3.25
46	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.63	0.00
47	E9a_E11a	KnownJunction	1	10.16	63.31	35.57	50.20	77.23	44.89	58.04
48	I9	Intron	1	2.72	5.14	4.64	3.51	3.30	45.71	3.07
49	I9_AR1	ActiveIntronRegion	1	2.34	5.85	4.34	2.89	3.95	47.55	2.34
50	I9_AR4	ActiveIntronRegion	1	4.40	2.87	4.62	2.49	0.96	31.04	2.85
51	I9_AR5	ActiveIntronRegion	1	3.53	4.14	5.63	5.58	2.35	47.93	5.11
52	E10_Aa	NovelBoundary	1	10.08	8.46	5.75	4.71	3.30	60.22	9.10
53	ER10a	ExonRegion	0	1.03	1.00	2.27	3.18	1.42	12.08	1.66
54	E10_Da	NovelBoundary	1	3.49	5.75	3.62	7.72	0.00	47.94	3.18
55	E10a_E11a	KnownJunction	0	0.58	0.00	0.50	0.00	0.00	1.47	0.00
56	I10	Intron	1	3.16	10.35	5.72	7.92	3.24	87.60	4.28
57	I10_AR1	ActiveIntronRegion	1	3.35	5.87	3.77	1.57	1.94	25.69	1.45
58	I10_SR1	SilentIntronRegion	1	3.26	4.69	3.59	1.60	4.90	24.82	1.74
59	I10_AR2	ActiveIntronRegion	1	2.93	13.18	6.40	14.94	5.01	127.78	6.94
60	I10_SR2	SilentIntronRegion	1	2.55	16.32	7.21	10.02	4.39	153.87	7.41
61	I10_AR3	ActiveIntronRegion	1	3.25	12.61	7.15	10.37	2.48	116.94	5.04
62	E11_Aa	NovelBoundary	1	0.85	8.96	3.03	3.93	2.33	67.24	0.89
63	ER11a	ExonRegion	1	5.53	33.91	27.81	22.80	44.74	35.42	29.79
64	IG41	Intergenic	0	0.62	11.24	3.47	8.68	1.22	80.71	0.96
65	IG41_SR3	SilentIntergenicRegion	0	1.07	5.92	5.12	3.97	1.50	74.89	3.41
66	IG41_AR3	ActiveIntergenicRegion	0	1.54	12.35	7.45	3.74	3.91	101.76	4.72
67	IG41_SR2	SilentIntergenicRegion	0	0.36	2.57	1.69	2.94	1.50	47.92	1.37
68	IG41_AR2	ActiveIntergenicRegion	0	0.43	4.90	1.18	3.31	0.46	48.74	0.00
69	IG41_SR1	SilentIntergenicRegion	0	0.47	6.17	2.36	9.00	1.20	80.22	0.87
70	IG41_AR1	ActiveIntergenicRegion	0	1.25	38.27	8.95	17.62	1.15	133.24	0.55