Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PREX1	Gene	0	15.81	17.28	1.69	2.24	44.25	23.20	0.74
2	396220	Transcript	0	2.80	3.14	0.01	0.99	2.31	7.96	0.02
3	371941	Transcript	0	0	0	0	0	0	0	0
4	396223	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER1a	ExonRegion	0	5.39	6.56	0.07	1.15	6.19	7.15	0.11
6	E1a_E2a	KnownJunction	0	25.55	12.16	0.80	0.00	24.37	11.47	0.89
7	ER2a	ExonRegion	0	21.86	23.57	1.09	0.03	26.35	26.19	0.96
8	E2a_E3a	KnownJunction	0	19.61	44.06	1.74	0.00	37.32	40.12	0.57
9	ER3a	ExonRegion	0	33.38	41.59	3.34	0.87	39.02	45.08	0.84
10	E3a_E4a	KnownJunction	0	30.96	41.54	3.41	1.11	68.33	46.42	1.68
11	ER4a	ExonRegion	0	26.75	42.90	2.75	0.97	52.12	32.86	0.54
12	E4a_E5a	KnownJunction	0	19.94	43.90	2.60	1.27	39.44	33.15	0.00
13	ER5a	ExonRegion	0	17.10	35.72	1.79	1.31	31.44	19.06	0.50
14	E5a_E6a	KnownJunction	0	15.76	39.72	3.28	1.63	52.70	18.73	0.00
15	ER6a	ExonRegion	0	13.77	39.42	2.95	1.39	40.63	22.96	2.03
16	E6a_E7a	KnownJunction	1	11.82	41.22	1.47	0.00	33.84	9.78	1.52
17	ER7a	ExonRegion	1	20.48	52.84	3.65	2.21	44.25	22.91	0.84
18	E7a_E8a	KnownJunction	0	23.67	60.98	3.62	2.30	46.66	30.82	2.21
19	ER8a	ExonRegion	0	15.50	36.79	2.24	2.46	56.51	31.71	1.46
20	E8_Da	NovelBoundary	0	5.24	19.10	0.89	0.00	3.04	6.03	0.62
21	E8a_E9a	KnownJunction	0	19.54	22.20	2.70	4.71	74.51	44.51	0.00
22	ER9a	ExonRegion	0	17.57	24.56	2.48	2.81	54.03	31.08	0.00
23	E9a_E10a	KnownJunction	0	10.92	18.23	0.83	1.65	55.07	24.74	0.00
24	ER10a	ExonRegion	0	21.23	18.15	2.51	5.22	73.59	24.35	0.35
25	E10a_E11a	KnownJunction	0	16.11	20.12	3.12	4.20	71.67	21.20	0.00
26	ER11a	ExonRegion	0	24.89	18.28	2.59	4.73	73.28	26.78	0.86
27	E11a_E12a	KnownJunction	0	34.60	19.78	0.00	1.14	65.95	15.73	2.15
28	ER12a	ExonRegion	0	19.25	24.60	2.62	1.03	81.29	27.22	1.16
29	E12a_E13a	KnownJunction	1	18.24	25.67	5.19	0.00	72.34	8.98	0.00
30	ER13a	ExonRegion	0	21.30	26.56	3.21	0.00	67.36	14.98	1.40
31	E13a_E14a	KnownJunction	0	22.06	21.49	0.00	1.30	61.69	15.97	1.49
32	ER14a	ExonRegion	0	15.36	15.81	0.71	0.00	58.76	24.81	0.51
33	E14a_E16a	KnownJunction	0	12.50	7.22	2.30	0.00	50.09	7.88	0.66
34	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER16a	ExonRegion	0	10.34	10.75	2.54	0.00	54.23	14.93	0.56
36	E16a_E17a	KnownJunction	0	13.60	12.37	2.62	1.65	47.35	21.41	0.00
37	ER17a	ExonRegion	0	14.86	11.32	1.55	0.66	52.82	22.93	0.46
38	E17a_E18a	KnownJunction	0	14.29	16.47	2.66	0.00	45.64	21.41	1.52
39	ER18a	ExonRegion	1	13.41	10.62	2.34	4.46	38.62	29.83	0.40
40	E18a_E19a	KnownJunction	1	5.61	8.91	0.00	3.71	26.97	32.45	0.00
41	ER19a	ExonRegion	0	10.95	14.44	1.90	4.34	49.11	30.43	0.69
42	E19a_E20a	KnownJunction	0	9.96	16.21	0.89	7.72	51.27	28.09	0.00
43	ER20a	ExonRegion	0	10.90	16.50	0.79	4.48	44.98	20.47	0.24
44	E20a_E21a	KnownJunction	0	14.05	14.84	0.60	3.09	49.33	22.78	0.89
45	ER21a	ExonRegion	0	12.45	13.40	0.81	3.19	45.95	28.90	1.93
46	E21a_E22a	KnownJunction	0	17.61	10.69	0.00	1.00	42.65	25.25	0.89
47	ER22a	ExonRegion	0	14.04	14.83	1.35	2.35	44.20	25.90	1.63
48	E22a_E23a	KnownJunction	0	18.23	17.13	4.70	0.00	65.89	23.50	3.34
49	ER23a	ExonRegion	0	12.45	19.20	1.26	2.36	46.65	22.13	0.97
50	E23a_E24a	KnownJunction	0	12.28	11.40	1.42	2.87	28.75	19.70	0.00
51	ER24a	ExonRegion	0	14.55	18.85	0.84	5.50	45.49	20.79	0.93
52	E24a_E25a	KnownJunction	0	13.00	23.96	1.49	0.00	40.53	23.37	0.00
53	ER25a	ExonRegion	0	16.62	12.71	1.02	4.29	40.45	24.99	0.83
54	E25a_E26a	KnownJunction	1	9.85	6.91	0.00	1.46	32.85	25.59	0.83
55	ER26a	ExonRegion	0	10.97	8.59	0.90	2.54	35.75	19.62	0.14
56	E26a_E27a	KnownJunction	0	5.21	15.74	1.37	0.00	53.02	24.31	0.64
57	ER27a	ExonRegion	0	11.56	17.76	2.05	2.90	49.70	20.80	0.80
58	E27a_E28a	KnownJunction	0	9.06	21.70	2.28	3.31	84.90	29.72	1.59
59	ER28a	ExonRegion	0	13.37	15.72	3.09	1.72	69.55	27.11	1.52
60	E28a_E29a	KnownJunction	0	12.02	21.17	2.50	0.00	63.76	20.48	1.30
61	ER29a	ExonRegion	0	20.21	12.88	2.48	3.80	47.89	30.01	2.02
62	E29a_E30a	KnownJunction	0	20.35	13.58	2.53	1.65	53.90	35.97	1.99
63	ER30a	ExonRegion	0	18.40	17.02	2.77	1.52	80.03	21.60	0.34
64	E30a_E31a	KnownJunction	0	16.01	14.06	2.74	3.25	52.45	19.35	0.00
65	ER31a	ExonRegion	0	17.51	14.90	3.20	2.26	52.40	23.34	1.20
66	E31a_E32a	KnownJunction	0	9.88	14.16	1.71	0.00	36.38	10.59	0.00
67	ER32a	ExonRegion	1	11.45	18.22	2.26	0.12	46.10	6.42	0.75
68	E32a_E33a	KnownJunction	0	15.04	11.85	2.27	1.49	41.77	5.44	0.89
69	ER33a	ExonRegion	0	9.30	13.38	1.59	0.91	35.51	9.25	0.83
70	E33a_E34a	KnownJunction	0	19.13	11.19	0.57	3.25	53.64	10.16	1.58
71	ER34a	ExonRegion	0	17.48	18.96	1.53	1.78	64.02	21.74	1.15
72	E34a_E35a	KnownJunction	0	17.98	25.01	2.72	3.01	52.33	18.47	1.38
73	ER35a	ExonRegion	0	16.87	18.20	2.56	3.68	63.34	26.39	1.88
74	E35_Da	KnownBoundary	0	1.45	4.18	0.00	0.00	4.06	1.02	0.00
75	E35a_E35b	KnownJunction	0	19.79	16.34	2.03	8.53	52.21	18.60	2.79
76	ER35b	ExonRegion	0	2.80	3.14	0.01	0.99	2.31	7.96	0.02
77	E35_Ab	KnownBoundary	1	2.65	0.00	0.00	0.00	1.96	13.16	0.00
78	ER35c	ExonRegion	0	18.42	21.12	2.42	5.37	44.37	35.70	2.01
79	E35b_E36a	KnownJunction	0	32.21	21.65	2.82	3.25	59.61	31.38	1.48
80	ER36a	ExonRegion	0	31.10	22.47	3.32	3.55	62.96	46.50	2.02
81	E36a_E37a	KnownJunction	0	20.24	20.91	2.92	2.14	67.27	46.47	1.88
82	ER37a	ExonRegion	0	21.33	15.00	1.83	1.85	55.25	25.92	0.83
83	E37a_E38a	KnownJunction	0	19.59	14.74	0.00	1.03	51.13	18.06	0.69
84	ER38a	ExonRegion	0	18.30	19.07	0.66	4.75	37.74	21.14	0.76
85	E38a_E39a	KnownJunction	0	21.65	14.37	0.72	2.74	37.81	14.90	0.77
86	ER39a	ExonRegion	0	16.68	18.12	0.86	3.19	40.85	18.12	0.53
87	E39a_E40a	KnownJunction	0	7.79	13.58	0.69	2.52	13.35	28.81	0.00
88	ER40a	ExonRegion	0	16.37	11.19	1.26	1.38	36.89	22.63	0.34
89	IG8_AR36	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	9.12	0.00	0.00