Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ARF1GAP	Gene	0	50.59	154.36	59.35	177.79	72.30	181.28	98.90
2	370275	Transcript	0	0.48	7.15	0.40	4.29	0.00	1.49	0.00
3	353546	Transcript	0	0.88	4.89	0.27	8.80	1.37	13.00	0.30
4	370283	Transcript	1	35.63	166.85	105.46	197.44	83.29	159.78	176.63
5	395285	Transcript	0	22.77	53.71	19.65	48.07	22.29	41.29	19.28
6	ER1a	ExonRegion	0	23.64	100.35	31.89	143.67	50.44	119.97	68.40
7	E1a_E2a	KnownJunction	0	8.14	33.15	14.92	54.56	3.20	35.46	25.94
8	ER2a	ExonRegion	0	19.43	129.84	24.09	143.65	19.63	137.46	45.21
9	E2a_E3a	KnownJunction	0	39.17	216.74	45.76	241.16	31.08	249.91	96.08
10	ER3a	ExonRegion	0	89.73	217.85	109.51	276.79	104.87	331.59	174.42
11	E3a_E4a	KnownJunction	0	76.77	236.55	99.37	287.46	194.13	303.53	149.46
12	ER4a	ExonRegion	0	86.30	288.81	112.81	328.94	137.59	379.50	178.28
13	E4a_E5a	KnownJunction	0	90.83	220.31	123.66	244.52	116.44	301.20	155.38
14	E4a_E6a	NovelJunction	1	4.94	14.27	9.43	56.19	1.06	65.98	5.75
15	I4_SR1	SilentIntronRegion	0	18.13	17.32	12.97	18.76	6.99	12.19	14.31
16	ER5a	ExonRegion	0	88.24	237.32	114.48	248.99	127.68	316.53	177.24
17	E5_Da	NovelBoundary	0	42.73	23.33	25.81	22.32	11.07	16.78	27.82
18	E5a_E6a	KnownJunction	0	52.39	195.49	61.79	207.38	86.79	285.95	130.79
19	I5	Intron	0	27.44	21.59	19.72	21.08	8.13	14.10	23.54
20	I5_AR1	ActiveIntronRegion	0	35.71	25.85	24.40	23.90	10.25	15.97	27.41
21	E6_Aa	NovelBoundary	0	14.42	15.71	12.39	15.20	5.07	14.31	18.44
22	ER6a	ExonRegion	0	54.78	225.31	91.07	275.25	114.62	275.55	145.22
23	E6a_E7a	KnownJunction	0	78.41	245.24	118.30	339.88	145.76	323.10	190.72
24	ER7a	ExonRegion	0	87.06	253.32	115.90	316.14	128.88	330.73	195.97
25	E7a_E8a	KnownJunction	0	68.48	228.25	94.33	285.11	113.05	294.58	146.05
26	E7a_E9a	NovelJunction	1	1.52	4.23	1.98	14.01	0.00	17.47	0.00
27	ER8a	ExonRegion	0	61.41	192.18	84.15	268.27	98.45	230.53	140.09
28	E8a_E9a	KnownJunction	0	60.97	153.90	82.04	230.27	101.85	182.91	117.96
29	ER9a	ExonRegion	0	45.38	148.10	69.42	226.57	103.34	203.59	141.40
30	E9_Da	NovelBoundary	0	29.96	72.82	25.49	75.77	40.25	46.66	31.16
31	E9a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E9a_E10c	KnownJunction	0	26.09	129.23	46.70	172.22	85.30	164.68	107.90
33	I9	Intron	0	28.23	87.07	28.62	83.90	26.27	78.23	31.87
34	I9_AR1	ActiveIntronRegion	0	28.31	87.33	28.71	84.15	26.34	78.46	31.96
35	E10_Aa	NovelBoundary	0	30.08	88.40	25.82	105.55	20.98	72.06	26.74
36	ER10a	ExonRegion	0	42.12	72.97	39.21	78.64	27.50	72.07	40.78
37	E10a_E10c	KnownJunction	1	0.00	0.00	0.00	0.00	0.00	8.92	0.00
38	ER10b	ExonRegion	0	76.29	90.15	48.30	102.64	38.06	90.01	67.06
39	ER10c	ExonRegion	0	39.15	80.45	33.13	76.42	28.53	66.68	32.67
40	E10_Ac	KnownBoundary	0	37.40	82.28	26.74	71.49	35.20	69.25	18.92
41	ER10d	ExonRegion	0	86.81	251.32	97.97	291.14	130.46	286.97	171.56
42	E10_Db	KnownBoundary	0	3.44	18.05	1.32	5.53	6.55	6.35	4.16
43	E10b_E10d	KnownJunction	0	83.32	210.59	100.05	262.13	112.68	263.66	158.76
44	ER10e	ExonRegion	0	2.42	11.76	2.77	2.91	4.83	3.05	2.82
45	E10_Ad	KnownBoundary	0	2.54	20.57	2.74	2.49	3.02	1.66	2.72
46	ER10f	ExonRegion	0	71.93	249.60	124.29	268.56	131.13	237.12	179.22
47	E10_Dc	KnownBoundary	1	17.74	74.43	11.24	39.82	37.53	20.21	6.22
48	E10c_E10e	KnownJunction	0	0.95	8.75	0.80	6.42	0.00	1.45	0.00
49	E10c_E10f	KnownJunction	1	35.63	166.85	105.46	197.44	83.29	159.78	176.63
50	E10c_E10g	KnownJunction	0	2.65	14.66	0.80	26.39	4.10	30.07	0.89
51	ER10g	ExonRegion	1	19.23	60.12	13.20	44.16	30.46	33.19	5.58
52	E10_Ae	KnownBoundary	1	26.60	56.98	18.47	42.51	39.74	31.19	7.94
53	ER10h	ExonRegion	1	20.18	61.64	12.47	53.62	29.14	30.10	6.21
54	E10_Dd	KnownBoundary	1	18.29	41.38	9.50	46.41	27.82	20.50	6.03
55	E10d_E10f	KnownJunction	0	0.00	5.54	0.00	2.17	0.00	1.53	0.00
56	ER10i	ExonRegion	0	12.25	38.61	7.39	38.17	19.55	23.18	3.63
57	E10_Af	KnownBoundary	0	5.49	18.10	6.62	18.21	5.88	13.80	2.25
58	E10_Ag	KnownBoundary	0	25.49	111.55	40.67	100.54	40.87	100.61	68.12
59	ER10j	ExonRegion	0	58.02	219.08	112.45	245.65	93.27	211.28	180.12
60	ER10k	ExonRegion	0	68.69	222.56	97.29	264.48	105.59	246.08	165.81
61	E10e_E11a	KnownJunction	0	81.20	219.94	107.46	254.20	88.75	249.37	163.19
62	ER11a	ExonRegion	0	56.30	168.43	71.20	162.02	84.23	155.38	115.56
63	E11_Da	KnownBoundary	0	53.41	141.10	58.65	136.24	75.13	143.06	74.49
64	E11a_E11b	KnownJunction	0	21.45	58.32	22.20	48.11	22.87	49.58	30.22
65	ER11b	ExonRegion	0	78.54	268.07	97.74	328.21	127.90	345.24	187.30
66	E11_Ab	KnownBoundary	1	29.31	73.19	19.95	134.81	6.85	168.87	49.53
67	ER11c	ExonRegion	0	20.57	40.29	11.93	68.49	21.78	86.56	25.54
68	ER11d	ExonRegion	0	3.07	6.68	0.00	11.85	3.24	3.68	4.38