Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SLCO4A1	Gene	0	33.54	92.59	7.21	6.84	27.63	25.94	8.18
2	217159	Transcript	0	2.35	0.16	0.37	0.00	5.01	0.00	0.31
3	370512	Transcript	0	2.31	4.69	0.88	0.56	2.15	1.66	0.85
4	370507	Transcript	0	0	0	0	0	0	0	0
5	342674	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	2.79	0.31	0.74	0.00	9.62	0.00	0.28
7	E1_Ab	KnownBoundary	0	9.83	2.05	1.47	0.00	26.42	0.00	0.63
8	ER1b	ExonRegion	0	15.74	40.61	2.91	4.10	17.51	11.81	6.21
9	E1a_E2a	KnownJunction	0	24.77	94.37	0.65	7.96	1.87	28.70	12.54
10	I1_SR2	SilentIntronRegion	0	12.60	5.38	2.12	0.11	3.89	1.78	1.01
11	I1_AR4	ActiveIntronRegion	0	14.90	3.65	1.10	0.54	5.12	1.33	0.98
12	I1_AR9	ActiveIntronRegion	0	11.65	2.43	0.00	0.00	1.62	0.00	0.56
13	E2_Aa	NovelBoundary	0	10.83	1.13	0.00	0.00	10.97	0.00	0.00
14	ER2a	ExonRegion	0	23.04	73.64	0.93	4.94	4.53	15.62	3.34
15	E2_Ab	KnownBoundary	0	10.31	56.67	1.55	5.82	2.21	16.51	0.76
16	ER2b	ExonRegion	0	30.60	122.60	4.97	8.16	27.34	27.48	8.06
17	E2_Da	KnownBoundary	0	45.90	135.04	10.25	13.36	33.93	39.53	8.28
18	E2a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER2c	ExonRegion	0	35.41	124.82	7.92	12.25	31.04	30.49	5.62
20	E2b_E3a	KnownJunction	0	26.60	113.18	7.34	10.38	19.66	23.88	4.13
21	ER3a	ExonRegion	0	20.86	99.77	8.70	7.41	25.06	28.40	5.09
22	E3a_E4a	KnownJunction	0	22.63	88.25	9.24	4.39	26.30	31.33	3.86
23	ER4a	ExonRegion	0	20.74	90.15	9.74	5.91	19.00	25.95	8.34
24	E4a_E5a	KnownJunction	0	23.67	111.15	11.77	11.16	23.08	24.44	5.23
25	E5_Aa	NovelBoundary	1	13.22	0.00	3.02	0.00	2.19	0.00	0.00
26	ER5a	ExonRegion	0	28.34	109.71	9.84	8.52	26.88	31.11	9.24
27	E5_Da	NovelBoundary	0	10.73	30.71	1.26	1.14	0.00	4.31	0.00
28	E5a_E6a	KnownJunction	0	34.38	92.21	9.21	8.89	33.54	37.52	10.62
29	I5	Intron	0	25.66	18.57	1.60	0.64	0.95	2.42	1.30
30	I5_SR1	SilentIntronRegion	0	9.43	21.47	1.23	0.50	1.36	2.87	0.79
31	I5_AR1	ActiveIntronRegion	0	35.63	23.05	1.98	0.98	0.81	2.88	2.19
32	I5_SR2	SilentIntronRegion	1	32.04	10.73	1.59	0.44	0.68	1.46	0.88
33	E6_Aa	NovelBoundary	0	17.98	17.52	2.17	0.00	0.00	1.23	1.18
34	ER6a	ExonRegion	0	47.55	103.34	10.18	11.13	27.04	32.92	6.53
35	E6_Ab	KnownBoundary	0	64.84	115.75	8.81	10.00	28.95	30.26	12.87
36	ER6b	ExonRegion	0	55.39	91.82	9.68	9.03	33.94	32.37	12.26
37	E6_Da	NovelBoundary	1	21.75	10.43	1.32	0.00	0.00	0.00	0.00
38	E6a_E7a	KnownJunction	0	47.30	82.62	13.42	9.83	42.03	34.06	6.08
39	E6a_E8a	NovelJunction	0	5.77	14.82	1.70	1.68	3.18	4.69	1.49
40	I6	Intron	1	18.55	8.10	0.79	0.26	0.15	0.00	0.47
41	I6_SR1	SilentIntronRegion	0	18.58	8.11	0.79	0.26	0.15	0.00	0.47
42	ER7a	ExonRegion	1	70.51	106.34	10.01	6.80	33.13	30.80	8.79
43	E7_Da	NovelBoundary	1	83.37	29.35	1.31	0.00	0.00	2.95	2.16
44	E7a_E8a	KnownJunction	0	27.40	72.43	4.83	1.22	23.58	18.25	5.88
45	ER8a	ExonRegion	0	31.04	100.86	8.67	5.56	37.07	32.19	11.32
46	E8a_E9a	KnownJunction	0	30.74	87.48	14.31	6.26	43.69	29.72	10.63
47	E8a_E11b	NovelJunction	0	1.77	15.32	1.58	1.60	8.64	1.29	2.29
48	ER9a	ExonRegion	0	42.22	100.91	15.17	10.07	43.02	38.16	12.04
49	E9_Da	KnownBoundary	0	44.14	92.11	8.88	12.76	38.20	36.31	9.06
50	E9a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER9b	ExonRegion	0	52.19	89.58	11.30	7.98	40.15	24.60	10.24
52	E9_Ab	KnownBoundary	0	51.35	75.58	9.69	4.39	40.80	13.59	10.12
53	ER9c	ExonRegion	0	48.19	89.00	13.77	7.54	36.06	21.80	11.75
54	E9b_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E9b_E11b	KnownJunction	0	43.86	99.52	15.45	11.16	42.49	30.66	14.96
56	E10_Aa	NovelBoundary	0	15.47	11.24	1.68	0.00	1.01	0.00	2.39
57	ER10a	ExonRegion	0	0.00	0.06	0.02	0.00	0.00	0.00	0.03
58	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	ER11a	ExonRegion	0	11.53	23.39	4.40	2.81	10.73	8.28	4.22
60	ER11b	ExonRegion	0	44.59	81.02	15.44	12.45	54.01	30.55	12.06
61	E11a_E12a	KnownJunction	0	43.91	77.24	13.58	8.34	56.48	23.42	9.47
62	ER12a	ExonRegion	0	41.07	99.35	8.38	10.39	37.51	17.71	11.41
63	E12a_E13a	KnownJunction	0	32.06	60.14	8.39	10.57	31.86	11.42	7.54
64	I12	Intron	0	13.67	16.41	1.78	0.92	10.65	2.21	1.36
65	I12_AR1	ActiveIntronRegion	0	17.26	24.04	2.50	1.22	14.02	3.59	1.65
66	E13_Aa	NovelBoundary	0	12.20	17.29	3.03	0.00	9.38	2.89	2.57
67	ER13a	ExonRegion	0	33.52	56.85	10.19	8.52	32.33	12.77	10.37
68	ER13b	ExonRegion	0	30.30	89.31	9.45	4.65	32.60	25.99	11.90
69	E13_Ab	KnownBoundary	0	38.05	69.33	9.01	4.23	35.57	26.18	11.82
70	ER13c	ExonRegion	0	27.23	53.23	5.11	2.80	21.70	25.25	6.21
71	ER13d	ExonRegion	0	3.18	3.64	1.16	0.89	7.40	2.45	1.35
72	ER13e	ExonRegion	0	1.92	0.00	0.00	0.00	0.40	0.00	0.34