Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PCIF1	Gene	0	68.91	118.21	146.81	108.90	99.08	96.18	58.41
2	372409	Transcript	0	68.80	121.47	155.72	103.26	103.84	88.57	62.10
3	ER1a	ExonRegion	0	24.49	56.37	53.76	47.45	39.08	26.18	18.68
4	E1a_E2a	KnownJunction	0	12.67	56.01	30.75	33.16	13.00	28.17	10.68
5	ER2a	ExonRegion	0	45.92	107.22	102.10	84.19	55.26	78.81	31.07
6	E2_Da	NovelBoundary	0	23.95	70.22	34.47	53.99	44.54	73.24	7.15
7	E2a_E3a	KnownJunction	0	39.54	102.85	104.80	66.13	133.25	61.24	44.11
8	I2	Intron	0	6.17	13.63	7.30	19.15	4.52	27.32	2.07
9	I2_AR1	ActiveIntronRegion	0	15.40	32.79	17.47	35.56	12.53	35.19	5.01
10	I2_SR1	SilentIntronRegion	1	1.23	3.39	1.87	10.39	0.23	23.16	0.50
11	ER3a	ExonRegion	0	54.37	98.93	136.22	96.47	81.23	78.45	47.22
12	E3a_E4a	KnownJunction	0	77.16	117.54	167.43	118.04	62.70	100.20	51.69
13	ER4a	ExonRegion	0	71.60	122.89	189.75	110.41	85.25	116.20	60.03
14	E4a_E5a	KnownJunction	0	101.06	114.36	227.30	111.89	155.45	95.76	77.06
15	I4	Intron	1	5.72	6.12	11.40	10.63	3.48	19.89	0.95
16	I4_AR2	ActiveIntronRegion	1	6.84	8.62	15.48	14.38	4.69	28.34	1.14
17	ER5a	ExonRegion	0	66.27	122.39	163.85	95.35	87.91	102.26	53.38
18	E5a_E6a	KnownJunction	0	59.08	128.60	157.05	88.80	79.90	100.12	44.11
19	ER6a	ExonRegion	0	51.73	98.12	128.18	74.88	84.63	79.32	44.18
20	E6a_E7a	KnownJunction	0	35.85	105.06	136.49	79.73	82.64	65.95	52.40
21	E7_Aa	NovelBoundary	1	1.70	5.62	0.00	15.06	0.00	28.81	0.83
22	ER7a	ExonRegion	0	53.95	103.78	143.26	97.38	79.43	73.88	51.97
23	E7_Da	NovelBoundary	0	2.70	17.63	5.04	24.44	5.14	30.63	0.89
24	E7a_E8a	KnownJunction	0	44.41	111.65	138.24	90.97	90.16	67.96	46.79
25	E8_Aa	NovelBoundary	1	4.52	12.45	6.18	31.80	3.23	40.71	2.31
26	ER8a	ExonRegion	0	65.91	138.02	179.16	113.63	106.46	96.57	64.53
27	E8_Da	NovelBoundary	1	1.82	7.51	0.86	20.18	4.15	35.05	1.89
28	E8a_E9a	KnownJunction	0	78.79	135.30	187.42	103.30	118.58	60.09	64.22
29	E8a_E10a	NovelJunction	1	1.32	3.68	2.24	16.07	2.05	7.37	3.18
30	ER9a	ExonRegion	0	72.63	126.71	179.35	96.52	109.93	70.60	64.25
31	E9a_E10a	KnownJunction	0	80.04	120.32	182.36	80.51	97.84	71.10	60.74
32	I9	Intron	0	8.34	13.68	11.44	22.31	3.91	18.42	2.95
33	I9_SR1	SilentIntronRegion	0	8.40	13.78	11.52	22.50	3.94	18.57	2.97
34	E10_Aa	NovelBoundary	1	12.75	21.96	14.20	46.65	2.19	49.10	3.02
35	ER10a	ExonRegion	0	89.12	140.61	211.42	112.97	141.79	97.17	86.71
36	E10_Da	NovelBoundary	1	1.84	11.95	2.04	18.21	4.01	27.09	0.75
37	E10a_E11a	KnownJunction	0	94.05	156.08	185.61	115.54	131.59	101.14	90.30
38	I10	Intron	1	6.24	10.47	8.86	16.89	3.56	25.93	1.43
39	I10_SR1	SilentIntronRegion	1	6.26	10.50	8.89	16.94	3.57	26.01	1.44
40	E11_Aa	NovelBoundary	1	1.50	10.01	6.85	11.05	1.18	28.89	4.70
41	ER11a	ExonRegion	0	92.73	162.68	188.05	139.62	141.04	124.10	81.56
42	E11a_E12a	KnownJunction	0	98.60	142.39	187.88	134.45	139.63	92.27	86.93
43	E11a_E13a	NovelJunction	0	0.77	9.01	4.41	10.62	0.00	5.63	2.41
44	I11	Intron	0	3.11	12.87	4.59	18.23	2.30	24.63	1.36
45	I11_SR1	SilentIntronRegion	0	3.14	12.99	4.64	18.41	2.32	24.89	1.37
46	ER12a	ExonRegion	0	73.12	133.35	168.01	127.03	149.55	98.17	81.92
47	E12a_E13a	KnownJunction	0	84.80	135.48	218.16	113.19	179.79	83.62	101.42
48	ER13a	ExonRegion	0	76.34	142.38	170.13	126.26	126.04	101.65	87.74
49	E13a_E14a	KnownJunction	0	68.58	173.31	129.69	111.05	104.98	87.58	60.74
50	ER14a	ExonRegion	0	80.79	165.52	182.48	144.20	142.78	113.49	84.07
51	E14a_E15a	KnownJunction	0	69.61	114.52	167.74	99.15	77.32	94.76	60.84
52	I14	Intron	0	1.46	10.55	2.46	17.90	0.77	21.30	0.87
53	I14_SR1	SilentIntronRegion	0	1.42	10.91	2.52	18.59	0.78	22.09	0.85
54	E15_Aa	NovelBoundary	1	4.16	20.39	3.19	20.81	1.06	39.99	1.95
55	ER15a	ExonRegion	0	67.67	123.88	153.48	117.94	111.78	104.81	66.57
56	E15_Da	NovelBoundary	1	1.03	13.14	1.18	10.21	0.00	28.19	1.29
57	E15a_E16a	KnownJunction	0	82.58	104.67	164.20	91.76	112.64	98.94	71.81
58	E16_Aa	NovelBoundary	0	0.00	16.34	2.57	11.00	0.00	28.27	1.50
59	ER16a	ExonRegion	0	74.11	131.32	144.61	140.79	138.01	124.01	75.29
60	E16a_E17a	KnownJunction	0	101.59	124.95	147.55	138.06	97.49	123.36	85.06
61	ER17a	ExonRegion	0	81.12	91.40	112.19	106.79	69.60	105.01	41.21
62	IG29	Intergenic	0	5.50	8.26	7.84	11.92	1.23	10.09	1.20
63	IG29_SR1	SilentIntergenicRegion	0	7.24	6.49	10.19	10.70	1.46	8.81	1.52
64	IG29_AR1	ActiveIntergenicRegion	0	8.07	7.29	5.17	12.94	0.81	4.44	4.05
65	IG29_SR2	SilentIntergenicRegion	0	4.15	9.80	6.14	13.06	1.08	11.35	0.91