Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SLC35C2	Gene	0	93.77	59.16	90.46	84.91	75.22	68.05	103.76
2	243896	Transcript	0	5.50	2.17	4.89	3.15	14.86	3.13	12.84
3	372230	Transcript	0	0	0	0	0	0	0	0
4	372223	Transcript	0	0.00	0.00	0.85	3.09	0.00	1.15	0.62
5	317734	Transcript	1	18.78	14.13	16.18	11.62	17.43	0.00	18.14
6	372229	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	372227	Transcript	0	7.29	4.27	7.52	7.41	3.75	0.00	2.32
8	372225	Transcript	0	0.26	0.20	0.23	0.62	0.00	0.20	0.00
9	ER1a	ExonRegion	0	1.59	0.09	1.77	0.09	10.56	0.04	2.87
10	E1a_E3a	KnownJunction	1	9.41	4.26	8.02	6.20	19.16	6.22	22.82
11	E1a_E3b	KnownJunction	0	78.04	25.67	107.19	28.99	132.76	16.05	87.99
12	ER1b	ExonRegion	0	33.74	10.05	47.54	7.82	78.78	4.90	36.00
13	ER1c	ExonRegion	0	61.52	19.97	75.15	28.21	107.00	15.71	71.63
14	E2_Aa	NovelBoundary	1	46.60	22.78	37.46	19.99	14.50	9.97	7.82
15	ER2a	ExonRegion	0	12.96	4.72	12.43	8.88	6.55	0.00	4.00
16	E2_Da	NovelBoundary	1	11.18	6.99	27.81	4.14	21.60	1.45	10.78
17	E2a_E3a	KnownJunction	0	1.62	3.81	2.62	5.93	0.95	0.00	0.63
18	I2_AR3	ActiveIntronRegion	0	26.39	7.37	17.74	7.50	13.13	4.38	13.31
19	ER3a	ExonRegion	0	23.32	15.06	20.02	20.86	14.52	14.24	25.10
20	E3_Ab	KnownBoundary	0	35.58	13.32	29.69	21.05	19.62	28.70	36.37
21	ER3b	ExonRegion	0	57.16	40.87	62.64	48.98	54.63	43.69	65.63
22	E3_Da	KnownBoundary	1	28.41	45.32	42.02	43.64	27.18	53.25	66.90
23	E3a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER3c	ExonRegion	0	71.90	68.10	94.35	91.20	63.82	86.34	116.77
25	E3b_E4a	KnownJunction	0	87.94	95.63	117.68	127.82	85.64	140.51	151.12
26	ER4a	ExonRegion	0	78.67	98.03	97.81	126.48	74.56	102.55	147.27
27	E4_Da	NovelBoundary	1	12.17	17.02	6.37	7.86	1.18	3.67	16.47
28	E4a_E5a	KnownJunction	1	60.70	95.89	89.86	127.06	83.11	121.05	166.40
29	E5_Aa	NovelBoundary	1	31.08	5.28	35.39	3.20	9.15	0.00	5.80
30	ER5a	ExonRegion	0	85.99	93.43	106.76	129.55	132.59	117.96	190.81
31	E5a_E6a	KnownJunction	0	104.43	72.09	117.75	118.14	154.43	95.30	222.08
32	E5a_E8a	NovelJunction	0	2.47	14.79	4.84	11.92	7.10	12.30	7.60
33	E5a_E8b	KnownJunction	0	0.00	0.00	0.85	3.09	0.00	1.15	0.62
34	I5	Intron	0	8.73	13.58	9.76	10.68	6.23	6.38	4.31
35	I5_AR1	ActiveIntronRegion	0	9.31	14.12	9.97	11.46	6.35	6.37	4.33
36	ER6a	ExonRegion	0	124.70	70.51	135.14	114.55	130.82	87.05	220.40
37	E6a_E8a	KnownJunction	0	115.64	59.37	120.90	97.93	101.34	67.62	190.12
38	E6a_E8b	KnownJunction	1	18.78	14.13	16.18	11.62	17.43	0.00	18.14
39	I6	Intron	0	17.54	14.03	15.26	9.26	9.81	7.20	6.20
40	I6_SR1	SilentIntronRegion	0	20.26	17.66	20.85	12.73	10.43	9.70	7.46
41	I6_AR2	ActiveIntronRegion	0	24.55	16.14	15.02	8.19	12.31	7.48	6.76
42	I6_SR2	SilentIntronRegion	0	20.65	11.51	14.08	6.99	13.98	10.29	7.13
43	ER7a	ExonRegion	0	0.26	0.20	0.23	0.62	0.00	0.20	0.00
44	E8_Aa	NovelBoundary	1	33.96	17.42	22.89	21.65	12.29	21.15	9.99
45	ER8a	ExonRegion	0	135.50	82.27	135.58	110.49	108.71	106.05	188.22
46	E8_Ab	KnownBoundary	0	148.34	109.60	158.07	122.13	114.02	140.97	173.24
47	ER8b	ExonRegion	0	236.01	105.72	178.44	150.22	170.18	126.98	213.11
48	E8a_E9a	KnownJunction	0	274.82	91.08	211.96	145.34	278.48	124.78	261.62
49	ER9a	ExonRegion	0	366.75	105.58	307.05	187.49	239.54	145.79	271.93
50	E9a_E10a	KnownJunction	0	375.44	93.08	333.92	208.14	178.89	166.51	230.29
51	ER10a	ExonRegion	0	277.01	96.46	232.03	174.76	175.81	141.15	190.42
52	E10a_E11a	KnownJunction	0	131.03	73.30	140.60	126.98	123.89	74.37	139.76
53	ER11a	ExonRegion	0	105.93	71.29	115.89	104.40	89.35	81.00	123.50
54	E11_Da	NovelBoundary	1	11.67	28.22	10.32	4.36	14.64	12.17	11.26
55	E11a_E12a	KnownJunction	0	77.79	55.09	81.13	93.33	72.92	72.14	99.46
56	ER12a	ExonRegion	0	68.04	60.99	65.15	80.37	59.64	58.54	81.10
57	E12_Da	KnownBoundary	0	18.74	8.22	11.12	19.05	3.85	11.74	11.65
58	ER12b	ExonRegion	0	9.89	3.14	11.61	9.09	2.59	7.10	5.23
59	ER12c	ExonRegion	0	1.15	0.00	4.06	3.12	1.13	0.00	1.42
60	IG37_AR4	ActiveIntergenicRegion	0	22.13	9.00	13.35	9.37	3.02	14.53	6.11
61	IG37_AR3	ActiveIntergenicRegion	0	2.97	4.00	4.66	7.34	0.81	8.73	4.12