Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EYA2	Gene	0	45.06	34.71	31.43	10.60	7.91	7.80	0.72
2	327619	Transcript	0	0	0	0	0	0	0	0
3	317304	Transcript	0	0.63	2.89	0.00	0.00	0.92	2.25	0.00
4	357410	Transcript	0	0.00	1.08	0.00	0.00	0.00	1.34	0.00
5	360649	Transcript	0	0.00	0.11	0.00	0.00	0.15	0.00	0.00
6	372065	Transcript	0	0.00	0.01	0.00	0.00	0.00	0.00	0.00
7	372063	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	396339	Transcript	0	2.78	4.03	4.17	0.81	0.15	0.00	0.00
9	ER1a	ExonRegion	0	3.41	5.27	1.13	1.09	0.56	0.97	0.00
10	E1a_E5a	KnownJunction	0	13.52	25.85	5.78	5.88	4.52	5.65	0.00
11	ER2a	ExonRegion	0	0.00	0.23	0.00	0.00	0.31	0.00	0.00
12	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER3a	ExonRegion	0	0.01	0.02	0.01	0.00	0.00	0.00	0.00
14	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER5a	ExonRegion	0	36.85	62.66	31.35	10.26	7.50	12.36	0.00
18	E5a_E6a	KnownJunction	1	37.80	71.88	19.83	5.47	14.11	11.63	0.00
19	ER6a	ExonRegion	1	47.04	79.86	28.44	6.61	8.12	9.62	0.00
20	E6a_E8a	KnownJunction	1	51.82	63.84	33.68	6.69	3.30	7.13	0.00
21	ER7a	ExonRegion	0	0.28	0.00	0.18	0.00	0.29	0.00	0.00
22	ER8a	ExonRegion	0	66.70	84.94	56.76	14.63	11.07	15.29	0.16
23	E8a_E9a	KnownJunction	0	79.49	78.76	67.63	16.15	9.73	23.74	0.89
24	ER9a	ExonRegion	0	75.90	87.10	63.29	18.89	13.27	17.30	1.20
25	E9a_E10a	KnownJunction	0	55.93	49.81	41.20	14.30	7.79	11.55	0.64
26	E9a_E12a	KnownJunction	0	5.27	8.07	8.15	1.63	0.00	0.00	0.00
27	ER10a	ExonRegion	0	91.77	58.87	73.16	14.87	11.33	13.22	2.14
28	E10a_E11a	KnownJunction	0	105.65	62.39	94.28	16.04	13.95	16.37	2.12
29	E11_Aa	NovelBoundary	0	33.30	1.63	28.45	0.00	0.00	0.00	0.00
30	ER11a	ExonRegion	0	70.22	48.34	55.38	14.97	9.82	15.81	2.22
31	E11a_E12a	KnownJunction	0	75.66	37.23	66.78	5.26	12.66	11.18	2.28
32	ER12a	ExonRegion	0	57.49	42.52	39.36	15.87	9.20	6.69	1.50
33	E12a_E13a	KnownJunction	0	54.93	47.39	37.84	14.30	9.73	15.17	1.20
34	ER13a	ExonRegion	0	60.21	56.53	49.63	21.72	10.83	15.68	1.33
35	E13a_E14a	KnownJunction	0	45.10	58.82	48.18	28.99	15.77	5.28	2.72
36	E13a_E15a	KnownJunction	0	0.63	2.89	0.00	0.00	0.92	2.25	0.00
37	ER14a	ExonRegion	0	60.48	56.36	47.31	21.06	11.32	9.25	2.47
38	E14a_E15a	KnownJunction	0	54.18	53.59	46.30	15.31	9.11	10.51	0.83
39	ER15a	ExonRegion	0	53.30	51.58	47.18	20.14	11.87	12.20	2.09
40	E15a_E16a	KnownJunction	0	46.00	40.51	38.46	19.97	10.74	9.76	2.95
41	ER16a	ExonRegion	0	31.82	34.23	32.67	13.17	10.65	8.46	1.80
42	E16a_E17a	KnownJunction	0	29.14	38.83	36.76	12.35	6.22	5.49	2.38
43	E16a_E19a	KnownJunction	0	0.00	1.08	0.00	0.00	0.00	1.34	0.00
44	ER17a	ExonRegion	0	45.30	40.59	37.98	14.30	12.15	6.65	1.89
45	E17a_E18a	KnownJunction	0	58.13	30.58	37.26	11.76	16.16	1.50	0.00
46	ER18a	ExonRegion	0	58.80	44.19	49.58	27.99	17.71	5.09	0.54
47	E18a_E19a	KnownJunction	0	78.19	51.81	48.47	26.52	17.73	7.37	0.75
48	ER19a	ExonRegion	0	84.22	60.09	51.62	27.00	12.89	7.43	0.37
49	E19a_E20a	KnownJunction	0	61.19	51.02	43.17	25.47	13.88	8.68	0.70
50	ER20a	ExonRegion	0	61.11	26.18	31.13	7.96	8.83	8.86	0.32