Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RBM12	Gene	0	192.21	271.63	219.99	378.89	538.76	265.27	171.91
2	349942	Transcript	1	64.46	189.18	133.07	426.01	27.78	250.07	18.29
3	397446	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	352393	Transcript	0	0	0	0	0	0	0	0
5	397443	Transcript	1	9.73	155.87	46.04	284.35	52.42	140.08	13.37
6	397445	Transcript	1	29.34	33.94	41.79	53.34	22.89	41.65	9.00
7	317619	Transcript	0	0	0	0	0	0	0	0
8	374114	Transcript	0	20.92	14.74	20.79	13.41	129.70	12.62	20.38
9	374104	Transcript	0	0	0	0	0	0	0	0
10	359646	Transcript	0	2.99	18.34	1.55	9.21	1.04	7.21	0.00
11	397442	Transcript	0	6.96	12.41	13.26	13.25	26.34	13.47	13.21
12	317677	Transcript	0	0	0	0	0	0	0	0
13	401607	Transcript	1	15.75	18.83	28.45	30.55	29.56	24.52	9.44
14	402424	Transcript	0	0.17	0.05	0.00	0.00	0.07	0.00	0.00
15	ER1a	ExonRegion	0	3.07	10.93	8.01	12.36	19.44	2.01	3.43
16	E1_Ad	KnownBoundary	0	19.28	28.43	21.20	20.97	71.58	11.26	12.40
17	ER1b	ExonRegion	0	9.13	22.40	22.90	36.55	45.55	12.11	9.91
18	E1_Ae	KnownBoundary	0	182.12	319.78	243.58	572.00	1174.33	289.20	202.17
19	ER1c	ExonRegion	0	34.07	76.23	61.92	148.91	199.22	62.12	38.62
20	ER1d	ExonRegion	0	135.42	324.09	170.23	589.24	1013.00	287.73	161.28
21	ER1e	ExonRegion	0	189.28	446.53	223.15	742.97	865.41	399.14	228.54
22	E1_Da	KnownBoundary	0	74.47	152.69	80.39	222.23	122.89	145.90	32.55
23	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E1a_E5a	KnownJunction	0	9.36	18.89	14.13	19.02	38.11	20.18	5.59
25	ER1f	ExonRegion	0	87.13	309.15	100.53	354.64	184.41	239.89	67.52
26	E1b_E2a	KnownJunction	0	68.46	260.93	60.87	198.28	140.18	173.31	67.47
27	E1b_E2b	KnownJunction	0	13.99	38.70	9.38	26.79	30.64	24.17	11.74
28	E1b_E3a	KnownJunction	0	2.99	18.34	1.55	9.21	1.04	7.21	0.00
29	E1b_E5a	KnownJunction	1	9.73	155.87	46.04	284.35	52.42	140.08	13.37
30	I1_AR3	ActiveIntronRegion	0	44.69	14.86	44.52	14.31	11.56	9.01	18.81
31	I1_SR3	SilentIntronRegion	0	43.91	13.56	37.17	11.38	11.63	5.71	15.30
32	E2_Aa	NovelBoundary	1	83.92	19.68	54.38	34.49	6.96	12.86	24.35
33	ER2a	ExonRegion	0	116.52	312.55	118.58	278.60	175.89	227.00	153.97
34	E2_Ab	KnownBoundary	0	187.64	352.85	176.93	376.76	222.97	282.04	209.21
35	ER2b	ExonRegion	0	305.79	406.74	247.13	435.02	323.86	328.12	296.94
36	E2a_E3a	KnownJunction	0	359.89	368.38	249.83	396.94	510.83	312.43	320.16
37	E2a_E5a	KnownJunction	1	29.34	33.94	41.79	53.34	22.89	41.65	9.00
38	ER3a	ExonRegion	0	296.18	512.01	233.58	482.49	632.34	408.45	295.17
39	E3_Da	KnownBoundary	0	386.66	585.49	342.96	565.91	826.91	551.51	418.35
40	E3a_E5a	KnownJunction	1	13.17	32.76	17.68	11.54	13.32	26.56	10.86
41	ER3b	ExonRegion	0	294.89	450.99	259.86	419.66	701.45	344.63	334.48
42	E3_Ab	KnownBoundary	0	236.78	217.42	224.19	203.21	573.37	179.75	235.02
43	ER3c	ExonRegion	0	318.10	338.74	285.32	310.93	734.15	233.50	279.98
44	E3_Ac	KnownBoundary	0	378.39	331.62	274.80	333.00	938.23	219.62	315.84
45	ER3d	ExonRegion	0	370.37	345.88	273.78	321.91	798.49	215.12	280.98
46	E3_Db	KnownBoundary	0	391.71	331.07	227.02	309.35	845.16	181.41	287.16
47	E3b_E5a	KnownJunction	0	22.85	18.02	17.19	31.70	29.05	17.96	8.11
48	ER3e	ExonRegion	0	133.93	144.19	104.89	135.70	386.67	120.04	121.08
49	E3_Dc	KnownBoundary	0	19.49	16.68	29.14	11.89	131.24	6.67	25.27
50	ER3f	ExonRegion	0	16.48	19.70	22.81	8.63	102.85	8.91	22.07
51	E3_Dd	KnownBoundary	0	17.29	7.46	22.10	7.34	97.95	9.89	19.79
52	ER3g	ExonRegion	0	20.92	14.74	20.79	13.41	129.70	12.62	20.38
53	ER4a	ExonRegion	0	0.17	0.05	0.00	0.00	0.07	0.00	0.00
54	ER5a	ExonRegion	0	163.76	425.18	306.70	778.09	340.44	488.09	144.15
55	E5a_E6a	KnownJunction	0	218.65	462.17	439.39	784.59	726.16	529.27	205.93
56	ER6a	ExonRegion	1	205.68	527.80	459.04	955.39	691.59	682.19	183.22
57	E6a_E7a	KnownJunction	1	294.78	595.49	694.27	1084.43	847.68	750.10	222.24
58	ER7a	ExonRegion	1	331.38	581.45	674.85	1091.82	926.12	742.04	211.13
59	E7a_E8a	KnownJunction	1	354.41	431.85	611.50	716.51	1165.23	512.71	209.70
60	E7a_E9a	KnownJunction	1	64.46	189.18	133.07	426.01	27.78	250.07	18.29
61	ER8a	ExonRegion	1	483.20	518.90	837.83	904.38	1353.23	711.04	259.32
62	E8a_E9a	KnownJunction	1	579.07	553.59	947.13	958.62	1627.90	778.56	244.12
63	ER9a	ExonRegion	1	665.67	813.05	1102.70	1515.55	1487.02	981.55	323.00
64	E9a_E10a	KnownJunction	1	641.79	815.73	1092.45	1533.68	1271.78	1019.52	335.56
65	ER10a	ExonRegion	1	556.45	731.28	973.78	1338.31	1324.52	881.67	289.54
66	E10a_E11a	KnownJunction	1	440.08	559.56	691.82	1058.12	1262.35	662.25	254.77
67	ER11a	ExonRegion	0	386.31	567.16	642.03	1147.94	1220.12	688.22	288.13
68	E11a_E12a	KnownJunction	0	311.30	527.82	616.80	1109.52	1082.40	656.46	268.67
69	ER12a	ExonRegion	1	219.06	538.06	555.72	998.60	964.41	615.24	238.08
70	E12a_E13a	KnownJunction	1	178.45	547.97	505.42	1018.33	1047.01	614.79	240.24
71	ER13a	ExonRegion	1	214.02	512.95	566.46	1147.52	1106.54	635.60	306.70
72	E13a_E14a	KnownJunction	0	293.66	507.33	650.96	1186.73	1035.49	638.80	339.53
73	ER14a	ExonRegion	0	347.83	568.92	623.37	1177.23	1207.16	686.24	305.39
74	E14a_E15a	KnownJunction	0	451.16	575.29	670.94	1201.87	1450.39	625.13	338.15
75	E14a_E16a	NovelJunction	1	23.72	49.42	38.05	198.71	50.46	121.89	20.02
76	ER15a	ExonRegion	0	430.65	686.33	734.71	1409.72	1349.45	789.01	337.58
77	E15a_E16a	KnownJunction	1	419.60	659.39	757.93	1400.77	1377.50	809.00	308.15
78	ER16a	ExonRegion	0	412.87	614.13	597.63	1294.35	1431.97	735.57	263.07
79	E16a_E17a	KnownJunction	0	309.80	408.02	318.16	958.19	984.73	567.70	180.63
80	E16a_E18a	NovelJunction	1	3.39	2.73	11.31	72.58	5.23	37.36	0.00
81	E17_Aa	NovelBoundary	1	90.94	14.53	83.85	19.88	39.81	22.81	12.74
82	ER17a	ExonRegion	0	284.03	459.24	341.95	983.46	1246.48	498.16	187.93
83	E17a_E18a	KnownJunction	0	311.87	483.89	349.04	975.69	1162.14	449.24	197.20
84	E18_Aa	NovelBoundary	1	81.85	45.95	88.45	151.17	140.92	67.96	70.51
85	ER18a	ExonRegion	0	302.56	529.17	346.86	1154.40	1293.44	542.37	269.41
86	E18_Da	KnownBoundary	0	316.57	539.04	376.98	1227.12	1331.46	618.46	303.02
87	E18a_E19a	KnownJunction	1	4.56	5.94	12.39	7.48	14.57	6.75	20.84
88	ER18b	ExonRegion	0	296.73	573.59	415.96	1304.22	839.44	703.95	262.31
89	E18b_E19a	KnownJunction	1	272.66	430.88	399.73	1183.29	759.34	657.56	220.03
90	ER19a	ExonRegion	1	282.46	368.00	428.47	817.73	670.28	583.31	161.56
91	ER19b	ExonRegion	1	59.63	72.95	113.83	140.41	162.90	126.34	29.95
92	ER19c	ExonRegion	0	15.75	18.83	28.45	30.55	29.56	24.52	9.44
93	IG35_SR2	SilentIntergenicRegion	0	3.29	4.37	5.78	1.40	0.87	10.03	1.89