Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	L3MBTL	Gene	0	6.29	7.29	8.75	8.56	20.74	4.92	6.26
2	373135	Transcript	0	4.16	2.95	3.72	2.90	11.25	3.15	3.28
3	373134	Transcript	0	0.36	0.30	0.49	0.66	1.77	0.80	0.38
4	373133	Transcript	0	5.47	4.83	5.96	5.35	19.77	2.35	4.98
5	ER1a	ExonRegion	0	1.29	1.56	1.56	4.08	7.42	5.36	2.49
6	E1_Ab	KnownBoundary	0	5.71	4.86	1.22	5.72	8.16	9.25	3.22
7	ER1b	ExonRegion	0	3.53	6.01	4.20	10.48	9.43	8.07	2.96
8	E1a_E2a	KnownJunction	0	4.27	7.33	3.06	6.42	9.52	6.89	4.06
9	ER2a	ExonRegion	0	4.81	7.92	6.51	6.67	13.27	8.46	4.39
10	E2a_E3a	KnownJunction	0	4.74	9.88	7.04	2.55	10.56	5.87	4.53
11	ER3a	ExonRegion	0	7.44	9.43	11.56	10.29	14.85	6.69	5.57
12	E3_Da	NovelBoundary	0	2.62	5.31	3.13	8.13	2.95	5.84	4.01
13	E3a_E4a	KnownJunction	0	2.30	9.51	13.03	6.04	16.25	3.16	3.17
14	I3	Intron	0	3.19	6.13	4.91	10.06	9.12	3.43	4.83
15	I3_AR1	ActiveIntronRegion	0	3.05	3.89	4.93	11.21	6.58	3.46	4.30
16	I3_SR1	SilentIntronRegion	0	3.71	7.21	5.73	11.18	10.99	2.69	6.61
17	I3_AR2	ActiveIntronRegion	0	2.27	5.91	3.29	6.88	7.60	4.96	1.73
18	E4_Aa	NovelBoundary	0	3.10	2.44	5.53	15.31	2.21	1.47	4.82
19	ER4a	ExonRegion	0	5.46	10.83	11.96	13.45	31.21	8.25	5.65
20	E4a_E5a	KnownJunction	0	7.19	8.83	13.81	10.97	26.10	10.10	2.92
21	I4	Intron	0	2.99	2.51	4.26	3.78	8.73	2.88	2.82
22	I4_AR1	ActiveIntronRegion	0	1.62	6.56	3.49	6.51	9.20	0.85	3.12
23	I4_SR1	SilentIntronRegion	0	3.10	2.19	4.32	3.56	8.70	3.04	2.80
24	ER5a	ExonRegion	0	7.48	11.19	14.54	11.74	20.82	7.30	8.51
25	E5_Da	NovelBoundary	0	1.64	8.93	7.44	6.07	2.24	0.00	2.88
26	E5a_E6a	KnownJunction	0	5.91	8.96	11.87	8.43	18.67	2.36	9.95
27	E6_Aa	NovelBoundary	0	8.45	12.61	11.50	13.63	16.02	11.77	6.66
28	ER6a	ExonRegion	0	10.03	12.14	19.06	23.22	34.14	5.50	10.43
29	E6a_E7a	KnownJunction	0	11.65	20.60	16.31	21.10	44.03	4.34	11.15
30	ER7a	ExonRegion	0	8.63	9.75	12.54	11.75	28.33	3.64	13.68
31	E7_Da	NovelBoundary	0	4.26	4.02	7.04	0.00	8.28	6.65	5.29
32	E7a_E8a	KnownJunction	0	1.03	0.00	2.51	3.31	8.32	0.00	1.38
33	E7a_E9b	NovelJunction	0	1.52	8.83	8.23	12.98	5.03	2.63	3.43
34	I7	Intron	0	2.16	1.47	4.94	3.75	10.37	1.97	3.11
35	I7_SR1	SilentIntronRegion	0	2.37	1.83	5.53	3.60	10.90	2.16	3.36
36	I7_AR1	ActiveIntronRegion	0	1.32	0.00	2.60	4.48	8.42	1.23	2.15
37	E8_Aa	NovelBoundary	0	3.67	3.81	13.08	6.10	14.22	2.71	2.45
38	ER8a	ExonRegion	0	3.27	3.53	3.53	5.86	16.49	2.53	1.75
39	E8_Da	NovelBoundary	0	1.70	3.26	2.97	4.23	7.91	1.13	0.72
40	E8a_E9b	KnownJunction	0	1.80	1.63	2.04	2.79	7.26	3.99	1.82
41	ER9a	ExonRegion	0	5.47	4.83	5.96	5.35	19.77	2.35	4.98
42	E9_Ab	KnownBoundary	0	4.01	1.05	3.29	0.00	12.45	0.00	2.82
43	ER9b	ExonRegion	0	4.81	9.57	10.22	8.98	21.69	4.22	6.63
44	E9a_E10a	KnownJunction	0	4.16	10.32	8.77	7.31	18.90	9.78	9.13
45	I9_AR1	ActiveIntronRegion	0	3.22	2.51	5.94	4.36	7.71	2.58	2.46
46	ER10a	ExonRegion	0	4.53	11.39	11.84	14.62	25.87	6.40	7.84
47	E10a_E11a	KnownJunction	0	5.01	11.64	17.33	11.73	34.00	1.39	5.36
48	ER11a	ExonRegion	0	7.39	11.54	12.05	10.77	31.27	9.07	10.90
49	E11a_E12a	KnownJunction	0	4.49	4.52	6.31	10.59	23.97	16.08	5.88
50	ER12a	ExonRegion	0	7.02	12.25	15.45	15.35	23.70	7.71	6.13
51	E12a_E13a	KnownJunction	0	12.60	15.74	16.18	13.90	27.32	10.10	8.20
52	I12_AR2	ActiveIntronRegion	0	1.12	2.46	3.96	2.97	7.55	2.47	2.33
53	E13_Aa	NovelBoundary	0	2.04	7.41	5.40	8.02	1.18	4.40	6.72
54	ER13a	ExonRegion	0	10.24	12.57	14.91	11.27	35.39	11.08	8.07
55	E13a_E14a	KnownJunction	0	3.52	7.67	8.05	14.36	19.73	9.97	12.14
56	ER14a	ExonRegion	0	10.36	8.81	13.26	17.00	35.55	10.58	13.44
57	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.90	0.00	0.00
58	E14a_E15b	KnownJunction	0	11.37	10.25	15.18	25.03	49.49	6.06	11.31
59	ER15a	ExonRegion	0	0.72	0.61	0.97	1.32	2.63	1.61	0.76
60	ER15b	ExonRegion	0	6.14	14.26	12.66	17.07	21.52	9.80	9.74
61	E15a_E16a	KnownJunction	0	7.51	7.88	13.39	22.35	18.40	8.33	10.99
62	ER16a	ExonRegion	0	6.06	8.41	15.67	19.38	27.66	12.75	7.07
63	E16a_E17a	KnownJunction	0	5.77	8.22	17.89	18.37	35.57	14.04	3.81
64	E17_Aa	NovelBoundary	0	2.20	9.01	2.40	5.15	1.87	2.87	4.57
65	ER17a	ExonRegion	0	6.57	12.19	15.40	26.32	36.50	14.15	11.32
66	E17a_E18a	KnownJunction	0	5.81	6.70	11.97	21.84	46.64	10.96	10.52
67	E18_Aa	NovelBoundary	0	2.84	0.00	0.75	8.18	0.00	0.00	2.59
68	ER18a	ExonRegion	0	4.83	7.29	8.57	12.57	27.37	5.43	11.05
69	E18_Da	KnownBoundary	0	3.37	5.31	2.95	3.33	6.41	0.00	6.64
70	E18a_E18b	KnownJunction	0	2.30	1.63	0.00	0.00	8.30	0.00	1.22
71	ER18b	ExonRegion	0	2.77	6.57	3.53	5.28	8.65	1.09	4.98
72	E18_Ab	KnownBoundary	0	0.00	5.46	6.91	4.33	2.77	1.61	5.02
73	ER18c	ExonRegion	0	7.96	10.05	10.40	4.13	22.04	1.65	5.32
74	E18_Db	KnownBoundary	0	13.47	7.62	11.42	11.41	29.74	3.19	6.39
75	ER18d	ExonRegion	0	8.90	5.67	9.61	4.62	18.02	4.11	6.14
76	IG16	Intergenic	0	3.20	5.52	6.17	8.06	12.98	4.12	4.55
77	IG16_AR3	ActiveIntergenicRegion	0	4.11	4.77	7.03	5.47	10.38	1.77	4.91
78	IG16_AR4	ActiveIntergenicRegion	0	4.83	10.00	10.32	20.57	23.60	10.57	7.84
79	IG16_AR5	ActiveIntergenicRegion	0	5.74	9.50	10.62	13.82	26.26	7.52	7.17