Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GGTL3	Gene	0	26.75	36.50	26.55	172.55	44.92	69.43	25.95
2	336431	Transcript	0	22.01	18.92	18.43	96.07	29.31	37.18	17.91
3	253380	Transcript	0	1.30	3.67	1.70	3.94	5.29	1.70	0.24
4	356042	Transcript	0	0.63	0.03	1.19	4.70	1.83	2.10	0.22
5	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.13	1.23	0.90
6	ER1b	ExonRegion	0	5.41	16.20	9.64	67.71	9.02	29.14	7.40
7	E1a_E2a	KnownJunction	0	8.85	38.65	14.66	131.99	12.75	60.25	10.12
8	ER2a	ExonRegion	0	17.62	47.78	21.87	220.72	31.25	101.07	20.38
9	E2a_E3a	KnownJunction	0	31.99	64.47	31.05	275.30	38.59	116.15	41.65
10	E2a_E4a	NovelJunction	1	0.00	0.00	2.80	34.87	0.00	27.84	0.00
11	E3_Aa	NovelBoundary	1	10.82	0.00	13.34	5.36	2.14	1.02	0.00
12	ER3a	ExonRegion	0	30.84	69.09	36.32	257.14	50.42	100.86	31.30
13	E3a_E4a	KnownJunction	0	29.37	61.95	37.02	333.03	61.67	93.02	32.89
14	ER4a	ExonRegion	0	34.64	45.66	46.64	233.08	66.55	93.81	37.25
15	E4_Da	NovelBoundary	1	2.07	7.91	13.41	46.95	5.81	25.54	0.00
16	E4a_E5a	KnownJunction	0	23.77	12.74	21.66	67.59	39.49	21.04	33.72
17	E4_Db	NovelBoundary	1	5.94	5.67	10.39	51.88	2.07	23.48	1.55
18	E4b_E5a	KnownJunction	0	0.00	0.00	0.00	1.11	1.08	0.00	0.00
19	ER4b	ExonRegion	0	0.00	0.10	2.88	8.00	3.51	4.39	0.67
20	I4	Intron	1	29.02	21.34	34.89	113.93	22.50	44.95	3.51
21	I4_AR1	ActiveIntronRegion	1	29.09	21.39	34.97	114.19	22.55	45.05	3.51
22	E5_Aa	NovelBoundary	1	11.87	22.65	21.34	140.09	8.55	46.90	3.51
23	ER5a	ExonRegion	0	21.03	17.35	23.22	69.39	42.03	23.62	33.68
24	E5a_E6a	KnownJunction	0	14.29	16.34	26.07	75.12	30.98	18.63	25.67
25	ER6a	ExonRegion	0	21.62	30.06	21.93	132.28	50.01	38.19	35.95
26	E6a_E7a	KnownJunction	0	27.72	35.10	25.79	152.17	76.03	49.90	50.40
27	E7_Aa	NovelBoundary	1	12.82	13.58	14.03	67.84	5.19	27.76	1.52
28	ER7a	ExonRegion	0	25.39	47.27	24.37	187.80	63.85	78.33	38.79
29	E7a_E8a	KnownJunction	0	20.55	62.87	27.19	221.25	40.20	89.40	38.55
30	ER8a	ExonRegion	0	28.83	62.22	42.31	250.95	77.35	103.12	57.21
31	E8_Da	NovelBoundary	0	10.56	11.95	12.67	49.96	19.32	17.96	5.30
32	E8a_E9a	KnownJunction	0	43.38	56.35	48.83	273.57	129.60	96.75	68.03
33	I8	Intron	0	13.57	13.27	18.56	45.50	26.96	24.99	3.08
34	I8_AR1	ActiveIntronRegion	0	13.60	13.29	18.60	45.59	27.00	25.04	3.08
35	E9_Aa	NovelBoundary	0	11.38	20.89	12.65	74.58	50.35	31.97	4.03
36	ER9a	ExonRegion	0	34.08	55.19	43.95	294.93	83.55	132.56	36.13
37	E9a_E10a	KnownJunction	0	29.51	74.56	51.45	347.96	93.16	117.09	49.10
38	ER10a	ExonRegion	0	49.78	53.84	55.57	315.27	98.85	118.38	52.02
39	E10a_E11a	KnownJunction	1	63.77	36.70	54.39	339.56	106.07	158.82	58.60
40	E11_Aa	NovelBoundary	1	22.80	0.00	17.52	1.06	0.00	1.34	1.58
41	ER11a	ExonRegion	0	45.65	57.05	39.69	312.90	64.64	123.90	45.75
42	E11a_E12a	KnownJunction	0	68.33	63.87	44.75	302.91	105.93	103.58	60.74
43	ER12a	ExonRegion	0	51.93	52.49	46.07	276.65	83.86	116.18	44.29
44	E12_Da	NovelBoundary	0	5.77	9.48	9.60	34.70	26.00	17.98	4.61
45	E12a_E13a	KnownJunction	0	25.42	42.30	23.35	183.38	30.84	76.73	33.91
46	I12	Intron	0	8.89	8.46	11.24	28.23	18.24	12.65	3.18
47	I12_AR1	ActiveIntronRegion	0	8.92	8.48	11.27	28.32	18.29	12.69	3.19
48	E13_Aa	NovelBoundary	0	6.23	4.52	8.05	23.98	19.66	6.89	3.50
49	ER13a	ExonRegion	0	28.13	26.00	25.54	174.20	37.73	61.31	21.68
50	E13a_E14a	KnownJunction	0	0.00	1.63	0.89	2.52	0.00	0.00	0.00
51	E13a_E16a	KnownJunction	0	31.68	21.10	35.01	128.90	57.66	50.49	26.33
52	I13	Intron	0	6.80	3.54	6.23	7.87	10.79	2.38	1.14
53	I13_AR1	ActiveIntronRegion	0	6.84	3.56	6.27	7.91	10.86	2.40	1.15
54	E14_Aa	NovelBoundary	1	11.22	5.49	7.95	9.18	10.86	2.73	1.73
55	ER14a	ExonRegion	0	2.60	5.70	2.51	5.37	10.57	3.41	0.49
56	E14_Da	NovelBoundary	0	8.58	10.82	8.09	29.10	13.14	2.28	1.78
57	ER15a	ExonRegion	0	1.88	0.00	0.68	4.99	0.90	1.91	0.00
58	I15	Intron	0	5.35	7.88	5.92	11.35	5.66	4.79	2.63
59	I15_AR1	ActiveIntronRegion	0	5.40	7.93	5.97	11.43	5.71	4.83	2.66
60	E16_Aa	NovelBoundary	1	28.56	11.45	30.51	34.27	13.88	8.68	0.66
61	ER16a	ExonRegion	0	27.92	24.33	19.86	138.80	33.34	49.89	21.62
62	E16_Da	NovelBoundary	0	7.39	5.25	2.77	30.99	8.00	20.56	7.42
63	E16a_E17a	KnownJunction	0	23.70	24.41	16.80	99.40	23.24	41.11	24.98
64	ER17a	ExonRegion	0	26.77	24.77	20.50	113.26	32.16	43.17	15.71