Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CHD6	Gene	0	64.53	76.94	66.32	120.85	81.59	50.81	26.47
2	309279	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	373233	Transcript	0	67.89	78.11	69.06	131.15	85.82	49.94	27.10
4	373222	Transcript	0	2.91	5.42	4.21	6.47	2.46	2.57	0.33
5	ER1a	ExonRegion	0	2.60	3.76	2.82	0.71	6.76	1.15	0.95
6	E1_Ab	KnownBoundary	0	12.18	15.87	12.16	6.04	26.14	5.07	5.68
7	ER1b	ExonRegion	0	56.63	31.25	54.74	39.80	62.02	15.43	12.72
8	E1a_E2a	KnownJunction	0	2.64	2.94	3.85	11.22	2.26	4.82	0.00
9	E1a_E3a	KnownJunction	0	83.17	40.96	77.07	53.94	97.26	14.07	17.07
10	E1a_E4a	NovelJunction	1	20.53	58.98	15.82	15.20	22.64	20.50	3.61
11	ER2a	ExonRegion	0	3.26	4.30	5.97	9.93	3.34	2.47	0.36
12	E2a_E4a	KnownJunction	0	1.03	1.63	0.50	1.06	1.18	0.00	0.00
13	ER3a	ExonRegion	0	76.40	52.72	77.02	60.68	61.72	25.75	16.50
14	E3a_E4a	KnownJunction	1	30.88	42.22	33.24	30.23	20.82	20.58	5.90
15	ER4a	ExonRegion	0	78.41	198.96	74.75	187.28	62.21	102.55	29.09
16	E4a_E5a	KnownJunction	0	61.42	175.18	58.39	148.62	78.17	69.71	24.89
17	E4a_E6a	NovelJunction	0	2.94	5.60	9.57	19.80	0.00	7.13	0.00
18	ER5a	ExonRegion	0	76.45	187.61	71.64	162.89	79.61	78.84	27.02
19	E5a_E6a	KnownJunction	0	61.42	199.79	69.02	171.84	83.57	85.54	25.11
20	ER6a	ExonRegion	0	69.62	171.10	81.57	166.40	91.71	77.30	27.45
21	E6a_E7a	KnownJunction	0	32.11	99.28	42.87	116.98	47.00	52.55	21.80
22	ER7a	ExonRegion	0	42.24	126.63	56.00	144.87	57.83	55.42	30.57
23	E7a_E8a	KnownJunction	0	50.62	140.50	65.54	147.46	48.00	47.57	30.24
24	ER8a	ExonRegion	0	50.93	140.06	68.00	162.13	68.38	53.15	24.53
25	E8_Da	KnownBoundary	0	0.00	17.21	3.74	9.83	2.31	10.34	1.48
26	E8a_E8b	KnownJunction	0	45.46	105.06	55.00	140.74	87.30	48.53	17.41
27	ER8b	ExonRegion	0	2.17	9.78	4.48	5.61	1.15	3.29	0.67
28	E8_Ab	KnownBoundary	0	2.87	9.80	9.28	4.42	0.00	0.00	0.00
29	ER8c	ExonRegion	0	63.24	144.33	88.36	159.14	90.92	57.42	30.32
30	E8_Db	KnownBoundary	0	7.31	9.33	9.99	6.88	5.83	0.00	1.75
31	E8b_E9a	KnownJunction	1	53.62	118.75	71.95	135.94	65.29	34.09	24.78
32	ER8d	ExonRegion	0	5.46	8.44	6.23	4.56	4.38	2.28	0.63
33	ER9a	ExonRegion	0	47.72	112.16	56.53	142.04	52.37	44.94	22.20
34	E9a_E10a	KnownJunction	0	44.50	109.95	58.85	130.74	36.58	45.77	23.15
35	ER10a	ExonRegion	0	62.18	93.02	75.26	124.80	69.09	42.02	23.12
36	E10a_E11a	KnownJunction	0	70.77	78.42	68.36	112.48	79.35	44.89	20.91
37	ER11a	ExonRegion	0	97.07	128.51	109.53	142.23	70.26	57.51	23.96
38	E11a_E12a	KnownJunction	0	143.25	130.41	118.63	162.52	59.82	58.16	31.10
39	ER12a	ExonRegion	0	74.71	93.07	90.70	120.99	64.89	40.03	24.77
40	E12a_E13a	KnownJunction	0	42.66	75.98	67.07	109.29	45.81	38.06	20.32
41	ER13a	ExonRegion	0	38.19	98.40	66.94	111.71	44.10	40.81	28.18
42	E13_Da	KnownBoundary	0	43.23	105.30	77.76	138.27	49.38	45.21	38.02
43	E13a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER13b	ExonRegion	0	43.96	91.44	66.93	113.75	53.98	40.19	22.02
45	E13b_E14a	KnownJunction	0	52.24	69.83	68.75	79.54	61.44	36.74	15.68
46	E13b_E15a	NovelJunction	0	2.64	16.76	3.09	17.83	2.17	8.60	0.80
47	ER14a	ExonRegion	0	68.98	80.71	72.10	105.44	63.73	44.37	19.92
48	E14_Da	NovelBoundary	1	36.67	9.83	28.15	6.58	4.26	1.66	1.48
49	E14a_E15a	KnownJunction	0	82.03	71.64	71.42	120.83	84.79	45.80	16.88
50	ER15a	ExonRegion	0	122.16	123.31	102.66	181.96	118.74	64.78	37.25
51	E15a_E16a	KnownJunction	0	150.14	122.00	123.33	195.84	143.94	82.89	44.28
52	ER16a	ExonRegion	0	90.85	104.69	82.76	145.30	110.04	52.51	34.86
53	E16a_E18a	KnownJunction	0	85.47	76.34	65.36	112.29	74.25	60.51	26.33
54	E17a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER18a	ExonRegion	0	50.80	80.42	53.62	107.42	61.73	51.77	22.64
57	E18a_E19a	KnownJunction	0	40.67	48.79	39.42	68.24	37.94	32.62	16.52
58	ER19a	ExonRegion	0	40.53	70.09	45.80	103.82	49.80	36.41	23.46
59	E19a_E20a	KnownJunction	0	48.62	73.80	44.81	110.78	42.56	31.62	25.34
60	ER20a	ExonRegion	0	90.15	73.05	75.65	128.01	107.30	38.58	27.83
61	E20a_E21a	KnownJunction	0	120.38	96.49	103.80	178.72	97.56	66.97	29.67
62	ER21a	ExonRegion	0	129.78	115.67	111.31	215.84	110.29	70.60	36.28
63	E21_Da	NovelBoundary	1	19.86	9.56	10.17	8.56	8.94	5.63	0.00
64	E21a_E22a	KnownJunction	0	120.02	102.93	102.99	151.03	177.07	46.47	33.59
65	ER22a	ExonRegion	0	55.66	70.25	56.90	124.40	87.79	35.43	27.01
66	E22a_E23a	KnownJunction	0	24.90	51.10	39.16	99.07	41.91	33.10	23.79
67	ER23a	ExonRegion	0	34.46	68.26	57.33	103.65	63.57	36.52	28.62
68	E23a_E24a	KnownJunction	0	48.22	53.91	59.28	106.39	62.82	46.36	25.98
69	E24_Aa	NovelBoundary	1	23.02	3.34	24.96	3.90	0.00	3.40	1.78
70	ER24a	ExonRegion	0	48.86	81.91	72.31	123.15	83.93	53.74	33.00
71	E24a_E25a	KnownJunction	0	69.40	84.41	79.97	127.17	109.29	42.10	32.15
72	ER25a	ExonRegion	0	54.69	83.89	73.23	137.76	88.72	50.02	38.56
73	E25a_E26a	KnownJunction	0	43.34	71.43	64.65	137.30	94.33	47.25	38.37
74	ER26a	ExonRegion	0	37.05	70.03	56.73	125.67	67.36	46.43	30.69
75	E26a_E27a	KnownJunction	1	30.03	58.53	49.95	143.53	81.77	28.84	30.53
76	ER27a	ExonRegion	0	42.02	73.59	65.64	146.04	75.60	47.99	27.58
77	E27a_E28a	KnownJunction	0	39.04	88.30	66.71	127.19	64.43	37.84	19.63
78	ER28a	ExonRegion	0	43.03	90.30	70.45	133.42	70.73	44.95	21.36
79	ER28b	ExonRegion	0	40.86	86.25	66.38	114.51	57.23	41.17	19.90
80	ER28c	ExonRegion	0	40.41	64.41	53.75	111.01	53.61	39.76	19.30
81	E28b_E29a	KnownJunction	0	39.99	51.39	48.51	124.38	55.12	44.49	15.65
82	E28b_E30a	NovelJunction	1	0.58	0.00	1.25	11.43	0.00	0.00	0.00
83	ER29a	ExonRegion	0	43.74	51.22	53.52	138.19	62.13	48.46	22.66
84	E29a_E30a	KnownJunction	0	45.45	58.93	38.90	96.74	50.49	35.75	20.41
85	ER30a	ExonRegion	0	53.31	61.72	66.56	113.32	75.76	44.72	23.16
86	E30a_E31a	KnownJunction	0	74.22	66.68	76.95	113.48	83.98	35.30	26.28
87	ER31a	ExonRegion	0	88.77	85.17	96.41	141.38	124.65	45.87	38.44
88	E31a_E32a	KnownJunction	0	86.95	91.48	84.86	156.37	230.64	62.31	52.48
89	ER32a	ExonRegion	0	69.76	74.98	70.12	137.07	96.36	46.02	34.59
90	E32a_E33a	KnownJunction	0	62.70	93.08	65.07	158.10	99.13	58.18	31.29
91	ER33a	ExonRegion	0	58.84	86.11	71.90	149.29	90.44	51.04	29.04
92	E33a_E34a	KnownJunction	0	73.74	88.48	68.42	138.25	99.31	75.41	37.42
93	ER34a	ExonRegion	0	50.40	72.63	58.92	128.33	67.73	58.02	25.27
94	E34a_E35a	KnownJunction	0	51.29	70.07	57.54	112.37	45.30	45.40	26.38
95	ER35a	ExonRegion	0	51.98	76.62	49.80	137.47	72.01	51.56	22.34
96	E35a_E36a	KnownJunction	0	47.15	57.30	53.24	91.73	92.93	35.59	28.08
97	ER36a	ExonRegion	0	34.60	62.76	43.86	125.02	63.73	47.32	20.57
98	E36a_E37a	KnownJunction	0	70.80	66.39	72.58	157.97	95.37	71.72	29.55
99	ER37a	ExonRegion	0	70.58	79.98	69.21	150.26	89.98	63.75	26.44
100	E37a_E38a	KnownJunction	0	77.32	75.08	80.39	156.78	88.57	62.26	23.59
101	ER38a	ExonRegion	0	91.96	66.72	87.01	136.86	121.54	70.48	33.86
102	IG50_AR3	ActiveIntergenicRegion	0	12.74	8.35	17.27	29.96	23.52	17.50	4.63