Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CDK5RAP1	Gene	0	65.11	54.64	76.78	63.43	136.91	35.70	76.82
2	346416	Transcript	0	44.09	32.90	66.05	40.85	85.30	20.77	58.59
3	339269	Transcript	0	0.00	0.00	3.94	4.98	0.90	0.00	2.36
4	375351	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	357886	Transcript	0	1.62	2.68	2.62	1.53	1.83	3.38	0.68
6	ER1a	ExonRegion	0	3.13	1.78	2.92	0.00	4.73	0.85	5.14
7	ER1b	ExonRegion	0	34.25	23.16	43.11	18.22	133.15	15.53	51.78
8	E1a_E2a	KnownJunction	0	31.74	18.18	41.27	14.66	29.35	7.08	24.68
9	ER2a	ExonRegion	0	32.34	42.43	44.31	37.30	72.44	26.54	50.99
10	E2a_E3a	KnownJunction	0	38.20	56.25	57.63	45.22	69.76	35.48	62.67
11	E2a_E4a	NovelJunction	0	1.90	2.47	6.32	8.56	0.00	0.00	1.66
12	ER3a	ExonRegion	0	35.20	49.25	52.80	45.97	74.48	31.03	64.75
13	E3a_E4a	KnownJunction	0	34.03	28.79	44.59	39.61	85.85	38.51	55.95
14	ER4a	ExonRegion	0	50.63	46.20	67.16	55.51	108.45	36.15	69.75
15	E4a_E5a	KnownJunction	0	52.41	48.18	65.47	54.64	112.80	20.45	58.84
16	ER5a	ExonRegion	0	59.63	50.00	73.83	50.94	105.79	27.91	67.90
17	E5a_E6a	KnownJunction	0	48.33	46.79	69.19	45.08	112.66	18.14	66.67
18	E5a_E7a	NovelJunction	1	5.97	11.24	8.13	31.15	10.42	10.80	5.49
19	ER6a	ExonRegion	0	58.57	51.13	74.13	46.13	134.65	16.40	77.49
20	E6a_E7a	KnownJunction	0	67.14	46.47	86.25	42.67	194.10	24.68	97.47
21	E6a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER7a	ExonRegion	0	81.35	65.07	108.64	66.49	197.87	38.81	121.20
23	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E7a_E9a	KnownJunction	0	85.05	64.02	129.17	81.71	165.87	40.68	112.04
25	E7a_E10a	KnownJunction	0	0.00	0.00	3.94	4.98	0.90	0.00	2.36
26	E8_Aa	NovelBoundary	0	39.24	29.63	34.66	19.23	13.46	39.61	19.09
27	ER8a	ExonRegion	0	1.45	1.74	3.03	1.75	2.43	3.88	1.16
28	E8_Da	NovelBoundary	0	34.75	19.31	20.75	24.14	35.04	8.39	24.16
29	E8a_E9a	KnownJunction	0	3.42	6.31	4.83	2.84	3.07	6.27	0.89
30	E8a_E12a	NovelJunction	1	527.15	161.83	385.13	157.70	689.72	134.96	138.46
31	ER9a	ExonRegion	0	92.15	71.69	134.99	92.55	202.49	57.95	123.86
32	E9a_E10a	KnownJunction	0	82.55	53.94	87.13	53.72	163.05	27.68	65.82
33	ER10a	ExonRegion	0	76.38	59.30	89.49	66.73	170.02	31.90	80.15
34	E10_Da	NovelBoundary	0	33.40	13.82	27.49	20.75	32.18	17.50	14.63
35	E10a_E11a	KnownJunction	0	57.78	43.11	71.59	59.11	134.12	28.86	67.89
36	I10	Intron	0	17.21	6.67	23.35	10.04	18.25	8.56	9.40
37	I10_AR1	ActiveIntronRegion	0	18.06	7.14	26.83	10.40	21.12	6.05	10.70
38	I10_AR2	ActiveIntronRegion	0	15.23	5.55	14.65	9.24	11.09	15.12	6.19
39	E11_Aa	NovelBoundary	0	25.02	8.35	29.65	19.05	13.58	10.16	13.07
40	ER11a	ExonRegion	0	74.51	45.58	92.11	74.62	178.15	30.17	74.84
41	E11a_E12a	KnownJunction	0	91.48	49.26	98.95	84.77	182.79	38.65	72.23
42	ER12a	ExonRegion	0	124.41	75.16	117.09	105.50	221.61	51.64	100.98
43	E12a_E13a	KnownJunction	0	122.90	89.03	115.59	123.40	226.75	71.50	103.50
44	ER13a	ExonRegion	0	146.95	96.93	124.11	118.64	245.18	63.20	110.35
45	E13a_E14a	KnownJunction	0	99.67	82.97	104.76	109.26	180.53	48.99	92.51
46	ER14a	ExonRegion	0	88.76	68.99	88.99	93.38	169.45	46.94	93.03
47	E14a_E15a	KnownJunction	0	64.97	54.80	65.66	90.29	140.14	25.49	97.93
48	ER15a	ExonRegion	0	27.05	39.06	33.72	52.60	65.18	33.17	41.80