Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C20orf119	Gene	0	51.35	25.03	54.31	26.06	96.57	10.68	40.53
2	217074	Transcript	0	35.65	21.31	42.22	23.24	47.50	9.72	30.47
3	217073	Transcript	0	0	0	0	0	0	0	0
4	255136	Transcript	0	0	0	0	0	0	0	0
5	372822	Transcript	0	0.39	5.44	0.62	2.80	19.76	1.32	0.20
6	372821	Transcript	0	0	0	0	0	0	0	0
7	372824	Transcript	0	0	0	0	0	0	0	0
8	372826	Transcript	1	11.05	5.46	16.55	14.66	2.12	6.73	2.94
9	372819	Transcript	1	11.26	7.01	16.53	8.23	2.44	4.28	4.07
10	217075	Transcript	0	0	0	0	0	0	0	0
11	ER1a	ExonRegion	0	4.50	4.14	4.62	3.65	7.60	0.87	3.82
12	E1_Ab	KnownBoundary	0	8.75	8.09	7.69	4.14	12.66	1.31	8.46
13	ER1b	ExonRegion	0	10.51	16.21	13.77	12.60	18.53	4.28	14.19
14	E1a_E2a	KnownJunction	0	26.47	28.71	37.98	19.61	42.62	5.63	26.46
15	ER2a	ExonRegion	0	33.16	38.34	52.94	28.88	69.05	11.29	41.51
16	E2a_E3a	KnownJunction	0	37.07	33.68	56.36	37.79	41.68	16.46	41.13
17	ER3a	ExonRegion	0	32.19	38.86	56.48	32.01	66.55	9.97	48.34
18	E3a_E4a	KnownJunction	0	34.08	38.20	42.16	26.85	64.36	9.81	40.76
19	ER4a	ExonRegion	0	27.89	31.17	33.43	28.37	57.20	9.98	31.68
20	E4a_E5a	KnownJunction	0	27.74	33.05	32.42	23.81	66.42	11.15	29.69
21	ER5a	ExonRegion	0	28.45	30.90	36.34	31.28	70.39	12.39	28.55
22	E5a_E6a	KnownJunction	0	32.71	29.50	45.78	31.37	38.52	15.57	27.10
23	ER6a	ExonRegion	0	42.78	33.32	46.70	36.99	102.06	13.96	36.60
24	E6a_E7a	KnownJunction	0	63.07	32.97	76.77	39.28	187.47	15.03	58.47
25	E7_Aa	NovelBoundary	1	21.61	3.26	30.94	0.00	3.37	0.00	3.22
26	ER7a	ExonRegion	0	75.23	46.35	96.55	62.37	150.94	18.25	77.33
27	E7a_E8a	KnownJunction	1	7.38	6.62	11.63	11.35	12.68	0.00	5.39
28	E7a_E8b	KnownJunction	0	66.81	38.49	79.81	42.83	87.39	18.57	57.13
29	ER8a	ExonRegion	1	15.29	12.11	20.01	17.18	24.69	2.02	9.44
30	E8_Ab	KnownBoundary	1	20.66	12.14	22.86	19.34	29.28	2.63	11.59
31	ER8b	ExonRegion	0	66.85	48.05	78.91	50.39	125.56	16.33	63.94
32	E8_Da	NovelBoundary	1	72.48	20.57	68.16	25.55	115.79	4.05	64.12
33	E8a_E9c	KnownJunction	0	8.40	5.75	4.87	11.00	20.56	1.37	7.95
34	I8	Intron	1	44.02	20.29	50.80	12.98	97.88	3.87	46.56
35	I8_AR1	ActiveIntronRegion	1	45.72	21.07	52.77	13.48	101.66	4.02	48.35
36	E9_Aa	NovelBoundary	0	41.69	14.82	46.37	10.27	128.87	6.51	33.84
37	ER9a	ExonRegion	0	131.26	25.95	109.16	24.41	206.19	17.65	61.78
38	E9_Ab	KnownBoundary	0	49.44	10.17	78.89	22.49	174.72	8.66	67.99
39	ER9b	ExonRegion	0	41.01	18.56	59.84	22.25	139.56	7.96	66.59
40	E9_Ac	KnownBoundary	0	40.31	21.62	55.33	26.60	118.51	9.81	56.88
41	ER9c	ExonRegion	0	44.70	25.38	63.60	32.21	148.36	16.67	67.20
42	E9_Da	KnownBoundary	0	44.95	24.41	64.67	25.74	148.53	13.88	56.14
43	E9a_E9e	KnownJunction	0	0.00	0.00	0.00	0.00	2.31	0.00	0.00
44	ER9d	ExonRegion	0	42.69	19.11	65.16	18.35	111.03	6.93	49.43
45	E9_Ad	KnownBoundary	0	66.13	18.86	80.20	17.69	115.08	5.76	38.24
46	E9_Db	KnownBoundary	0	33.66	9.30	54.28	12.11	104.61	7.29	29.65
47	ER9e	ExonRegion	0	65.09	18.77	86.18	17.54	118.76	7.95	43.00
48	ER9f	ExonRegion	0	64.92	18.84	76.89	19.30	153.18	5.87	64.71
49	E9_Ae	KnownBoundary	0	44.01	21.41	42.74	30.40	120.13	9.09	51.08
50	ER9g	ExonRegion	0	48.85	23.32	36.18	35.01	123.76	11.55	47.73
51	E9c_E10a	KnownJunction	0	59.25	24.75	45.02	39.99	94.86	11.10	36.85
52	ER10a	ExonRegion	0	52.42	29.82	44.24	31.73	101.11	12.63	47.40
53	E10a_E11a	KnownJunction	0	48.45	35.97	41.50	30.69	99.91	14.47	47.32
54	ER11a	ExonRegion	0	56.37	27.79	45.86	32.16	116.45	10.13	44.47
55	E11a_E12a	KnownJunction	0	0.00	5.39	0.00	1.33	13.51	1.34	0.00
56	E11a_E13a	KnownJunction	0	71.12	28.61	51.56	29.29	149.36	7.56	52.20
57	E12_Aa	NovelBoundary	1	6.54	0.00	8.05	11.16	20.19	8.36	6.09
58	ER12a	ExonRegion	0	1.17	8.23	1.85	4.30	32.06	0.96	0.61
59	E12_Da	NovelBoundary	0	13.29	6.02	6.28	11.95	36.93	6.00	5.82
60	E12a_E13a	KnownJunction	0	0.00	2.71	0.00	2.79	13.72	1.66	0.00
61	I12	Intron	1	8.24	6.46	7.69	7.71	27.90	6.16	8.91
62	I12_SR1	SilentIntronRegion	1	11.55	7.64	8.43	6.46	32.91	3.60	8.84
63	I12_AR1	ActiveIntronRegion	1	7.50	6.20	7.54	8.02	26.82	6.77	8.95
64	E13_Aa	NovelBoundary	0	9.85	13.29	8.44	25.19	30.80	11.50	5.17
65	ER13a	ExonRegion	0	54.61	33.71	57.89	42.35	116.31	12.96	45.16
66	E13a_E14a	KnownJunction	0	35.47	16.34	18.08	11.89	68.19	2.36	22.63
67	E13a_E15a	KnownJunction	0	5.39	13.06	4.73	11.89	10.28	2.71	9.66
68	E13a_E16a	KnownJunction	0	4.56	1.13	7.26	2.57	0.00	4.05	1.76
69	E13a_E17a	KnownJunction	1	11.05	5.46	16.55	14.66	2.12	6.73	2.94
70	ER14a	ExonRegion	1	34.44	16.57	16.56	30.51	84.73	4.35	29.03
71	E14a_E15a	KnownJunction	0	31.38	13.69	18.11	28.26	60.54	7.13	32.86
72	ER15a	ExonRegion	0	22.12	19.03	14.94	20.97	64.25	5.51	21.58
73	ER15b	ExonRegion	0	0.77	1.21	0.00	0.00	1.62	0.00	0.00
74	I15_AR2	ActiveIntronRegion	0	5.56	1.05	3.43	0.84	22.34	0.95	4.61
75	E16_Aa	NovelBoundary	1	26.75	15.79	7.19	5.91	0.92	6.51	8.41
76	ER16a	ExonRegion	0	5.71	2.57	11.95	3.48	1.50	1.70	1.23
77	E16_Da	NovelBoundary	1	19.44	7.49	0.72	1.25	3.30	3.73	9.59
78	E16a_E17a	KnownJunction	1	5.96	2.13	16.24	3.98	1.04	0.00	1.32
79	E17_Aa	NovelBoundary	1	55.63	18.63	11.14	9.75	0.00	14.93	13.83
80	ER17a	ExonRegion	0	21.11	19.66	35.68	26.98	10.64	14.30	16.29
81	E17_Da	KnownBoundary	0	28.61	23.20	39.25	31.94	10.65	18.60	14.68
82	ER17b	ExonRegion	0	28.82	22.20	30.68	22.89	7.21	11.38	11.95