Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	UQCC	Gene	0	15.62	18.04	35.63	17.85	65.13	23.15	27.13
2	374380	Transcript	0	0.26	2.26	2.60	1.25	3.70	0.29	4.02
3	397553	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	397554	Transcript	0	6.09	8.64	7.38	4.42	27.71	4.17	10.41
5	374385	Transcript	0	0	0	0	0	0	0	0
6	349714	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	374384	Transcript	0	0	0	0	0	0	0	0
8	359226	Transcript	0	0	0	0	0	0	0	0
9	374377	Transcript	0	0.00	10.69	1.19	5.34	0.90	1.47	0.00
10	407375	Transcript	0	0	0	0	0	0	0	0
11	397556	Transcript	0	0.30	0.01	2.48	0.08	0.59	0.00	1.40
12	407996	Transcript	0	0	0	0	0	0	0	0
13	404265	Transcript	0	0	0	0	0	0	0	0
14	374394	Transcript	0	0	0	0	0	0	0	0
15	374381	Transcript	0	0.60	0.63	1.52	0.77	2.27	0.94	0.96
16	ER1a	ExonRegion	0	0.26	2.26	2.60	1.25	3.70	0.29	4.02
17	E1_Ab	KnownBoundary	0	0.00	3.26	2.08	2.84	1.71	0.00	5.06
18	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E1_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E1_Ae	NovelBoundary	1	24.65	4.18	49.33	5.15	69.60	6.67	12.20
21	ER1b	ExonRegion	0	18.88	6.42	40.16	4.81	51.37	5.08	16.77
22	ER1c	ExonRegion	0	29.97	9.72	77.22	9.98	95.56	7.36	30.36
23	ER1d	ExonRegion	0	30.74	9.72	79.25	9.98	102.04	8.58	32.83
24	E1_Da	NovelBoundary	1	5.29	5.70	4.61	10.19	28.77	0.00	8.83
25	E1a_E3a	KnownJunction	0	93.15	28.27	190.23	53.88	567.15	57.97	113.03
26	ER1e	ExonRegion	0	64.22	20.33	132.95	33.25	323.89	36.82	81.09
27	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.08	0.12	0.03
28	ER3a	ExonRegion	0	41.26	26.40	93.43	46.34	170.79	39.47	67.14
29	E3a_E5a	KnownJunction	0	0.00	0.00	2.27	0.00	0.00	0.00	1.48
30	E3a_E9a	KnownJunction	0	8.11	17.05	11.80	24.82	22.85	23.16	14.89
31	E3a_E10a	KnownJunction	0	0.00	10.69	1.19	5.34	0.90	1.47	0.00
32	E3a_E11a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	0.00	0.00
33	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER5a	ExonRegion	0	0.20	0.03	2.56	0.24	0.62	0.00	0.96
35	E5a_E9a	KnownJunction	0	0.70	0.00	2.62	0.00	1.15	0.00	1.75
36	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E8a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.13	0.00	0.00
40	ER9a	ExonRegion	0	56.26	27.92	122.14	49.92	93.66	57.32	78.93
41	E9a_E10a	KnownJunction	0	89.54	25.09	185.78	48.79	299.96	58.58	98.79
42	ER10a	ExonRegion	0	39.94	37.84	98.08	41.54	272.10	59.78	64.36
43	E10a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E10b_E11a	KnownJunction	0	24.52	25.64	76.72	43.75	108.05	45.77	42.68
45	E10b_E14a	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	0.00	0.00
46	ER10b	ExonRegion	0	27.47	31.59	79.68	32.58	118.24	49.50	43.68
47	ER11a	ExonRegion	0	25.42	31.60	87.75	34.11	109.83	45.48	52.39
48	E11a_E12b	KnownJunction	0	32.70	34.05	80.16	34.73	124.49	49.18	51.01
49	ER12a	ExonRegion	0	3.01	3.14	7.62	3.84	11.20	4.70	4.78
50	ER12b	ExonRegion	0	44.54	39.88	83.33	49.83	153.49	59.58	54.67
51	E12a_E13a	KnownJunction	0	38.67	43.66	69.09	48.30	161.30	54.78	50.99
52	ER13a	ExonRegion	0	37.43	44.21	95.86	40.85	169.83	56.96	62.63
53	E13_Da	KnownBoundary	0	0.00	11.77	5.63	9.70	32.41	6.30	6.91
54	E13a_E14a	KnownJunction	0	27.07	28.98	72.56	35.30	129.46	47.46	46.00
55	E13a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
56	ER13b	ExonRegion	0	6.09	8.64	7.38	4.42	27.71	4.17	10.41
57	I13_SR6	SilentIntronRegion	1	2.29	2.08	2.29	1.74	1.56	0.33	7.47
58	I13_AR19	ActiveIntronRegion	1	0.44	1.67	2.02	3.70	3.10	1.45	7.63
59	ER14a	ExonRegion	0	34.89	45.90	89.27	47.43	143.67	65.86	51.81
60	E14a_E15a	KnownJunction	0	31.66	46.61	85.86	41.64	158.00	74.21	41.27
61	I14	Intron	1	0.84	1.68	2.02	1.52	1.52	0.71	8.23
62	I14_AR1	ActiveIntronRegion	1	1.05	1.56	2.94	1.66	2.60	0.00	10.66
63	I14_SR2	SilentIntronRegion	1	0.67	1.32	2.38	1.18	0.89	0.93	9.32
64	I14_SR3	SilentIntronRegion	1	1.67	2.56	1.96	2.02	2.64	1.05	10.11
65	I14_AR3	ActiveIntronRegion	1	0.76	2.55	2.49	2.18	1.24	1.38	8.00
66	E15_Aa	NovelBoundary	1	1.54	1.02	0.76	5.34	2.10	4.15	15.08
67	ER15a	ExonRegion	0	28.01	37.63	87.92	45.43	135.02	52.18	49.39
68	E15_Da	NovelBoundary	1	10.92	7.07	11.37	24.22	16.02	12.78	11.14
69	E15a_E16a	KnownJunction	1	15.45	33.42	75.80	37.55	140.41	42.80	45.20
70	I15	Intron	0	4.67	7.25	11.85	5.81	14.35	6.36	9.10
71	I15_AR1	ActiveIntronRegion	1	4.68	7.26	11.86	5.81	14.36	6.37	9.11
72	E16_Aa	NovelBoundary	0	6.19	7.86	5.82	7.50	15.12	9.76	7.67
73	ER16a	ExonRegion	0	28.19	35.00	80.82	39.25	111.46	45.52	55.21
74	E16_Da	KnownBoundary	1	22.15	28.95	65.80	37.30	75.87	37.60	72.42
75	ER16b	ExonRegion	0	23.53	28.88	60.26	32.33	93.75	51.35	43.80
76	ER16c	ExonRegion	0	1.04	0.17	1.21	0.00	0.69	0.35	0.24