Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 AL121586.31 Gene 0 6.97 3.08 2.12 2.65 11.19 3.18 2.92 2 400465 Transcript 0 0.54 0.48 0.15 0.50 0.46 0.16 1.16 3 400461 Transcript 0 3.87 2.76 0.57 4.28 7.35 6.49 3.34 4 262870 Transcript 0 0 0 0 0 0 0 0 5 300494 Transcript 0 0.63 1.13 0.00 0.00 1.35 0.00 0.75 6 ER1a ExonRegion 0 2.50 0.31 0.32 0.92 3.57 1.74 2.66 7 E1a_E2a KnownJunction 0 2.44 1.52 0.00 0.00 7.68 0.00 3.34 8 ER2a ExonRegion 0 4.48 0.61 0.11 2.01 4.48 0.00 3.83 9 E2a_E3a KnownJunction 0 4.29 0.00 0.69 3.09 11.20 0.00 4.29 10 ER3a ExonRegion 0 4.78 1.59 1.48 1.57 8.63 0.00 4.06 11 E3a_E4a KnownJunction 0 7.16 2.78 2.16 3.85 5.44 0.00 2.41 12 ER4a ExonRegion 0 5.74 1.11 1.07 4.19 7.38 1.46 3.53 13 E4a_E6a KnownJunction 0 1.03 0.00 0.62 1.19 2.90 1.07 0.82 14 ER5a ExonRegion 0 0.32 0.63 0.00 0.00 2.70 0.00 0.61 15 E5a_E6a KnownJunction 0 0.93 1.63 0.00 0.00 0.00 0.00 0.89 16 ER6a ExonRegion 0 2.25 1.21 0.58 2.87 9.29 0.26 3.78 17 E6a_E7a KnownJunction 0 4.29 0.00 0.79 3.31 16.51 1.26 7.34 18 ER7a ExonRegion 0 5.94 1.36 1.35 4.30 15.65 6.25 6.73 19 E7a_E8a KnownJunction 0 5.37 5.49 0.00 5.74 11.20 0.00 4.57 20 ER8a ExonRegion 0 7.83 1.69 1.52 3.40 11.09 5.45 5.69 21 E8a_E9a KnownJunction 0 9.36 0.00 1.54 2.11 18.07 5.76 8.24 22 ER9a ExonRegion 0 8.39 1.36 2.47 1.75 14.22 6.29 4.63 23 E9a_E10a KnownJunction 0 0.85 0.00 1.42 0.00 0.00 0.00 0.00 24 E9a_E11a KnownJunction 0 3.87 2.76 0.57 4.28 7.35 6.49 3.34 25 ER10a ExonRegion 0 0.87 0.00 0.77 0.00 1.48 0.00 0.00 26 E10a_E11a KnownJunction 0 0.63 0.00 0.00 0.00 0.00 0.00 0.00 27 ER11a ExonRegion 0 5.71 1.39 2.21 2.51 8.72 4.50 6.39 28 E11a_E12a KnownJunction 0 1.29 1.52 2.36 1.54 5.14 0.00 5.62 29 ER12a ExonRegion 0 10.38 3.11 1.99 4.70 10.61 2.83 5.52 30 E12_Da KnownBoundary 0 11.42 1.60 0.89 5.58 6.78 1.15 1.36 31 E12a_E12b KnownJunction 0 1.87 0.00 0.00 0.00 1.82 0.00 4.64 32 ER12b ExonRegion 0 19.05 4.78 5.82 3.87 27.32 4.52 2.54 33 E12_Ab KnownBoundary 0 12.85 10.46 3.32 3.22 14.85 1.66 2.26 34 ER12c ExonRegion 0 8.17 4.91 2.08 3.00 13.45 4.23 3.99 35 E12b_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E12b_E14a KnownJunction 0 8.68 5.44 2.56 3.14 9.15 1.61 2.48 37 ER13a ExonRegion 0 0.28 1.94 0.60 1.99 0.01 0.65 0.01 38 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER14a ExonRegion 0 5.82 2.46 0.89 2.71 11.18 1.78 4.59 40 E14a_E15a KnownJunction 0 5.66 0.00 0.00 1.35 10.72 1.05 5.22 41 ER15a ExonRegion 0 5.50 3.84 0.46 2.73 8.63 1.24 4.44 42 E15_Da KnownBoundary 0 0.00 4.86 2.18 2.38 2.21 1.23 0.00 43 E15a_E15b KnownJunction 0 4.42 1.63 0.00 1.49 4.43 1.66 2.04 44 ER15b ExonRegion 0 0.69 1.66 0.35 1.28 2.23 1.44 0.31 45 E15_Ab KnownBoundary 0 0.00 0.00 1.39 3.12 0.99 1.42 0.00 46 ER15c ExonRegion 0 3.20 3.42 0.67 1.84 5.99 3.09 3.07 47 E15_Db KnownBoundary 0 1.39 1.63 0.79 1.54 0.00 3.32 0.00 48 E15b_E15c KnownJunction 0 0.77 2.26 0.00 0.00 5.83 0.00 2.92 49 ER15d ExonRegion 0 0.40 3.24 1.21 1.21 1.25 1.39 0.32 50 E15_Ac KnownBoundary 0 0.60 1.13 0.00 0.00 0.00 2.68 0.00 51 ER15e ExonRegion 0 1.38 1.48 0.81 2.17 7.68 2.63 3.25 52 E15c_E16a KnownJunction 0 2.40 2.52 0.53 1.68 8.51 4.98 3.04 53 ER16a ExonRegion 0 2.48 3.28 0.80 1.42 8.44 3.24 3.35 54 E16a_E17a KnownJunction 0 1.90 8.70 0.73 0.00 7.12 4.48 3.78 55 ER17a ExonRegion 0 3.77 6.18 1.51 3.61 8.40 6.48 3.06