Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MYH7B	Gene	0	1.12	1.71	1.00	2.43	0.54	1.97	0.90
2	374615	Transcript	0	0.74	0.00	0.00	0.78	0.00	0.61	0.00
3	262873	Transcript	0	0	0	0	0	0	0	0
4	ER1a	ExonRegion	0	1.47	0.00	0.00	1.56	0.00	0.00	0.00
5	ER1b	ExonRegion	0	2.51	0.00	0.61	2.01	0.00	0.00	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.05	0.00	0.04
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E3_Aa	NovelBoundary	0	0.68	5.46	1.68	8.05	0.00	4.66	0.00
10	ER3a	ExonRegion	0	0.57	1.70	0.32	1.16	0.23	3.39	0.29
11	E3a_E4a	KnownJunction	0	0.82	0.00	0.00	0.00	0.00	0.00	0.00
12	ER4a	ExonRegion	0	1.06	0.01	0.12	2.61	0.39	1.72	0.00
13	E4a_E5a	KnownJunction	0	1.57	0.00	0.69	0.00	0.00	0.00	0.00
14	ER5a	ExonRegion	0	0.96	1.27	0.62	1.31	0.00	2.76	0.27
15	E5a_E6a	KnownJunction	0	1.03	0.00	0.00	2.19	0.00	3.00	0.72
16	ER6a	ExonRegion	0	0.91	1.76	0.98	2.38	0.00	4.47	0.71
17	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	2.06	1.07
18	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.66	0.14
20	ER8a	ExonRegion	0	1.01	0.00	0.00	0.98	0.00	0.96	0.51
21	E8_Da	NovelBoundary	0	0.98	2.76	1.26	8.24	0.00	9.51	2.49
22	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER9a	ExonRegion	0	0.00	0.00	0.03	0.00	0.00	0.00	0.00
25	ER10a	ExonRegion	0	0.74	0.77	1.10	1.02	1.07	0.00	0.00
26	E10a_E11a	KnownJunction	0	0.78	1.26	0.00	0.00	1.18	0.00	0.00
27	ER11a	ExonRegion	0	1.07	0.32	0.00	0.00	0.38	0.00	0.00
28	E11_Da	NovelBoundary	0	0.95	4.12	0.56	2.28	0.00	9.30	0.00
29	E11a_E12a	KnownJunction	0	0.88	0.00	0.00	0.00	0.00	0.00	0.00
30	ER12a	ExonRegion	0	0.22	0.93	0.86	0.55	0.00	2.82	0.00
31	E12a_E13a	KnownJunction	0	0.00	0.00	0.85	1.68	0.00	0.00	0.00
32	ER13a	ExonRegion	0	1.43	0.89	1.13	1.61	1.19	2.66	0.49
33	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	1.54	0.00	0.00	0.00
34	ER14a	ExonRegion	0	1.12	2.64	2.07	5.88	0.59	2.68	1.55
35	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.67
36	E15_Aa	NovelBoundary	0	0.00	4.99	0.73	4.80	0.00	8.44	0.86
37	ER15a	ExonRegion	0	0.00	1.60	0.87	4.00	0.00	0.00	1.16
38	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER16a	ExonRegion	0	0.49	1.82	0.35	0.62	0.10	0.04	0.71
40	E16a_E17a	KnownJunction	0	0.83	0.00	0.00	2.22	1.13	1.10	0.00
41	ER17a	ExonRegion	0	1.03	2.15	1.45	3.97	1.12	5.91	2.08
42	E17a_E18a	KnownJunction	0	0.87	0.00	0.62	1.16	0.00	0.00	0.00
43	E18_Aa	NovelBoundary	0	0.70	1.63	5.75	6.83	0.00	8.68	4.97
44	ER18a	ExonRegion	0	1.21	2.52	2.95	3.57	1.53	5.69	2.26
45	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	1.13	0.00	0.00
46	ER19a	ExonRegion	0	0.88	1.38	1.90	2.14	1.04	4.84	0.78
47	E19_Da	NovelBoundary	0	0.93	4.15	2.24	5.93	0.00	9.97	2.22
48	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E20_Aa	NovelBoundary	0	0.00	1.63	3.10	6.58	0.00	8.92	1.19
50	ER20a	ExonRegion	0	0.28	0.00	0.65	0.00	0.00	0.00	0.64
51	E20_Da	NovelBoundary	0	1.90	2.99	2.30	3.17	0.00	7.88	5.52
52	E20a_E21a	KnownJunction	0	0.98	0.00	0.00	0.00	0.00	0.00	0.00
53	E21_Aa	NovelBoundary	0	2.75	7.57	0.70	2.90	0.00	4.40	4.10
54	ER21a	ExonRegion	0	0.40	0.00	0.00	0.00	0.94	2.06	0.00
55	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E22_Aa	NovelBoundary	0	0.63	2.92	0.89	1.38	0.00	8.25	3.21
57	ER22a	ExonRegion	0	1.95	1.33	0.69	1.63	0.82	0.79	0.44
58	E22a_E23a	KnownJunction	0	0.00	1.34	0.00	0.00	1.11	0.00	0.00
59	I22_AR1	ActiveIntronRegion	0	3.00	5.22	7.18	7.61	0.08	15.20	8.43
60	I22_AR2	ActiveIntronRegion	0	4.30	5.62	4.06	5.14	1.58	18.29	4.91
61	I22_AR3	ActiveIntronRegion	0	2.58	1.83	2.29	4.74	0.73	8.09	2.82
62	ER23a	ExonRegion	0	1.73	2.37	1.53	3.77	0.22	0.00	2.43
63	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER24a	ExonRegion	0	0.85	0.02	0.00	2.78	0.48	2.04	0.75
65	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	2.10	0.00	0.00
66	E25_Aa	NovelBoundary	0	1.69	4.47	4.56	8.32	0.00	6.30	3.35
67	ER25a	ExonRegion	0	2.65	1.44	2.39	5.83	0.82	2.16	2.19
68	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.97	0.00	0.00
69	I25_AR1	ActiveIntronRegion	0	3.07	2.43	2.71	14.34	0.00	8.58	2.36
70	I25_AR2	ActiveIntronRegion	0	2.99	2.43	4.06	13.72	0.00	11.03	4.05
71	I25_AR3	ActiveIntronRegion	0	1.30	3.18	4.06	11.80	0.00	12.64	4.05
72	I25_AR4	ActiveIntronRegion	0	0.77	3.64	4.52	11.64	0.00	12.26	5.32
73	I25_AR5	ActiveIntronRegion	0	0.41	2.80	7.35	10.07	0.00	12.26	4.41
74	ER26a	ExonRegion	0	2.06	3.39	1.39	1.97	0.90	3.06	1.67
75	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	E27_Aa	NovelBoundary	0	1.03	1.23	5.29	8.24	0.88	11.10	6.65
77	ER27a	ExonRegion	0	1.30	1.66	1.26	4.80	0.58	2.09	0.88
78	E27a_E28a	KnownJunction	0	0.00	1.26	0.00	0.00	2.01	0.00	0.00
79	ER28a	ExonRegion	0	0.40	2.18	1.29	3.85	0.71	3.04	1.38
80	E28_Da	NovelBoundary	0	0.97	0.97	1.78	8.07	0.00	6.78	4.00
81	E28a_E29a	KnownJunction	0	0.00	1.37	0.00	0.00	0.00	1.31	0.00
82	ER29a	ExonRegion	0	0.64	1.29	0.00	0.01	0.00	1.27	0.57
83	E29a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	ER30a	ExonRegion	0	0.35	0.95	0.26	1.70	0.10	0.94	0.53
85	E30a_E31a	KnownJunction	0	1.00	0.00	0.00	0.00	0.00	0.00	0.00
86	ER31a	ExonRegion	0	0.74	0.73	0.01	1.49	0.33	0.00	0.81
87	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
88	ER32a	ExonRegion	0	0.98	0.76	0.41	0.80	0.00	0.78	0.43
89	E32a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
90	ER33a	ExonRegion	0	0.48	1.86	0.25	3.37	0.42	1.42	0.52
91	E33a_E34a	KnownJunction	0	0.90	0.00	0.00	0.00	0.00	0.00	0.00
92	ER34a	ExonRegion	0	2.33	3.69	1.12	2.71	0.53	1.72	0.87
93	E34a_E35a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	1.66	0.00
94	E35_Aa	NovelBoundary	0	0.00	0.00	0.60	8.05	0.00	4.90	0.00
95	ER35a	ExonRegion	0	1.40	1.48	0.41	3.01	0.92	0.88	1.23
96	E35a_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	1.13	1.39	0.00
97	ER36a	ExonRegion	0	0.15	0.80	0.89	0.82	0.87	1.08	0.44
98	E36a_E37a	KnownJunction	0	0.90	0.00	0.00	0.00	0.88	3.32	0.00
99	E37_Aa	NovelBoundary	0	0.92	10.04	0.00	4.96	0.00	5.33	0.83
100	ER37a	ExonRegion	0	0.57	1.63	1.46	2.10	0.74	1.18	0.63
101	E37a_E38a	KnownJunction	0	0.75	0.00	0.00	1.22	0.00	1.10	0.00
102	ER38a	ExonRegion	0	1.45	2.85	0.94	2.39	0.37	2.10	0.00
103	E38a_E39a	KnownJunction	0	1.75	0.00	0.00	0.00	0.88	0.00	0.00
104	ER39a	ExonRegion	0	0.66	5.26	1.56	2.72	0.24	1.06	1.48
105	E39a_E40a	KnownJunction	0	0.95	1.26	0.66	0.00	0.88	0.00	0.00
106	ER40a	ExonRegion	0	0.86	2.71	1.37	0.95	1.49	0.89	1.33
107	E40a_E41a	KnownJunction	0	2.07	1.05	0.00	0.00	0.00	0.00	0.75
108	ER41a	ExonRegion	0	1.22	4.87	1.07	1.74	0.49	0.03	0.68
109	E41a_E42a	KnownJunction	0	0.82	0.00	0.00	1.19	2.05	0.00	0.00
110	ER42a	ExonRegion	0	2.44	0.64	0.37	0.81	1.14	4.87	0.73
111	E42a_E43a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.91	0.00
112	ER43a	ExonRegion	0	2.05	1.08	1.73	4.78	0.64	3.12	1.39
113	ER43b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.23	0.00