Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CBFA2T2	Gene	0	36.89	33.62	27.78	21.53	41.67	33.63	27.71
2	375279	Transcript	0	0.38	2.08	0.27	1.59	0.00	2.84	1.48
3	344201	Transcript	0	1.45	0.88	1.45	0.34	2.22	0.00	0.77
4	397800	Transcript	0	0	0	0	0	0	0	0
5	346541	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	342704	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	359606	Transcript	0	4.69	2.82	1.47	1.16	8.73	3.00	2.00
8	397803	Transcript	0	0.02	0.00	0.00	0.00	0.00	0.00	0.02
9	397798	Transcript	0	4.03	6.38	0.85	3.43	1.42	2.76	3.54
10	ER1a	ExonRegion	0	0.12	3.22	0.28	3.34	0.00	2.03	1.02
11	E1a_E3a	KnownJunction	0	1.02	3.02	0.00	1.44	0.00	6.49	2.74
12	E1a_E7b	NovelJunction	1	8.16	19.49	7.03	7.07	12.56	5.23	6.97
13	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.76	0.00	0.74
14	ER2b	ExonRegion	0	2.89	1.32	1.72	0.61	1.66	0.00	1.58
15	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E2a_E7b	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	0.00	0.00
17	E3_Aa	NovelBoundary	0	35.53	20.39	22.12	16.28	22.38	24.20	16.42
18	ER3a	ExonRegion	0	2.67	6.29	2.14	3.44	2.50	12.78	5.68
19	E3a_E7b	KnownJunction	0	2.57	7.15	1.22	3.28	4.31	8.71	5.65
20	E4_Aa	NovelBoundary	0	1457.80	1041.48	1147.82	982.73	356.14	954.15	1085.88
21	E4_Da	NovelBoundary	0	6377.84	4099.76	4844.18	3818.41	2598.40	3878.27	3471.53
22	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E5_Aa	NovelBoundary	1	216.94	168.06	293.21	103.79	119.97	94.25	112.49
24	ER5a	ExonRegion	0	7.01	0.67	2.93	1.14	15.56	1.82	2.62
25	E5_Da	NovelBoundary	1	167.25	125.89	152.20	109.64	103.83	108.78	54.83
26	E5a_E7b	KnownJunction	0	2.37	4.97	0.00	1.19	1.91	4.18	1.39
27	E6_Aa	NovelBoundary	0	526.53	219.42	418.95	193.38	271.75	187.04	232.96
28	E6_Da	NovelBoundary	0	3134.89	2144.01	2093.66	2011.08	1100.93	1644.59	1430.82
29	ER6a	ExonRegion	0	0.02	0.00	0.00	0.00	0.00	0.00	0.02
30	ER7a	ExonRegion	0	4.03	6.38	0.85	3.43	1.42	2.76	3.54
31	ER7b	ExonRegion	0	24.54	48.31	13.98	37.43	23.94	39.21	30.43
32	E7a_E8a	KnownJunction	0	29.56	56.33	23.68	54.26	38.94	59.42	48.41
33	ER8a	ExonRegion	0	38.48	66.16	32.17	40.21	51.68	58.65	35.95
34	E8a_E9a	KnownJunction	0	37.42	68.36	36.90	26.20	48.60	41.11	30.94
35	E8a_E12a	NovelJunction	0	0.72	1.08	0.00	1.30	1.18	8.60	0.00
36	ER9a	ExonRegion	0	32.46	48.85	34.23	25.11	50.46	39.15	35.65
37	E9a_E10a	KnownJunction	0	42.23	55.77	31.90	20.51	27.66	36.07	40.82
38	ER10a	ExonRegion	0	31.29	55.22	30.05	26.49	52.16	38.85	38.45
39	E10_Da	NovelBoundary	0	6.38	6.88	2.33	1.68	23.95	11.10	5.68
40	E10a_E11a	KnownJunction	0	1.74	2.65	3.00	4.06	0.92	3.00	1.36
41	E10a_E12a	KnownJunction	0	20.85	52.04	21.21	16.44	17.06	31.11	30.21
42	I10	Intron	0	4.59	3.52	2.67	3.01	8.88	1.79	2.27
43	I10_SR1	SilentIntronRegion	0	4.94	3.84	2.80	3.23	9.47	1.95	2.46
44	E11_Aa	NovelBoundary	0	14.14	11.24	11.84	6.20	9.75	8.92	11.59
45	ER11a	ExonRegion	1	14.61	7.46	6.93	6.53	12.80	4.69	4.38
46	ER11b	ExonRegion	0	2.90	1.77	2.89	0.68	3.68	0.00	0.80
47	I11	Intron	0	4.17	3.26	4.01	2.24	11.05	2.19	4.54
48	I11_AR1	ActiveIntronRegion	0	4.17	3.26	4.01	2.24	11.05	2.19	4.55
49	E12_Aa	NovelBoundary	0	11.00	5.94	4.64	7.40	18.37	1.31	10.43
50	ER12a	ExonRegion	0	31.96	66.03	33.62	35.43	55.60	43.23	39.83
51	E12a_E13a	KnownJunction	0	32.50	74.82	33.18	40.96	50.92	59.12	41.83
52	ER13a	ExonRegion	0	32.82	72.23	29.29	37.63	54.52	62.00	38.35
53	E13a_E14a	KnownJunction	0	34.60	67.65	22.23	48.11	40.62	52.42	40.62
54	ER14a	ExonRegion	0	41.00	63.78	35.21	32.91	54.98	51.60	40.55
55	E14a_E15a	KnownJunction	0	30.84	61.40	33.87	30.23	56.92	46.07	38.42
56	ER15a	ExonRegion	0	40.92	69.37	37.31	27.78	59.64	53.55	34.16
57	E15a_E16a	KnownJunction	0	49.59	68.67	48.05	22.81	64.09	54.16	30.27
58	ER16a	ExonRegion	0	47.93	65.35	46.06	29.75	69.00	58.38	46.63
59	E16a_E17a	KnownJunction	0	33.85	64.26	41.54	26.87	58.62	49.12	40.59
60	ER17a	ExonRegion	0	32.57	66.79	24.12	35.67	43.89	47.09	40.89
61	E17_Da	KnownBoundary	0	18.59	44.06	14.82	27.77	25.27	37.33	21.78
62	ER17b	ExonRegion	0	45.13	28.35	32.61	20.78	46.75	34.21	28.72
63	ER17c	ExonRegion	0	0.00	0.00	0.54	0.00	0.00	0.00	0.67