Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SPAG4	Gene	0	4.23	6.79	2.60	9.70	8.18	35.06	5.34
2	374273	Transcript	0	4.39	6.16	2.16	8.07	9.64	34.72	5.70
3	ER1a	ExonRegion	0	0.64	5.65	1.02	4.95	0.69	15.63	1.57
4	E1a_E2a	KnownJunction	0	0.00	1.23	0.00	0.00	0.00	4.45	0.82
5	I1	Intron	0	0.98	2.77	1.65	2.31	3.01	9.42	2.20
6	I1_AR1	ActiveIntronRegion	0	1.73	2.50	3.20	2.59	7.18	17.11	2.08
7	E2_Aa	NovelBoundary	0	2.39	5.88	1.55	4.33	6.96	16.05	5.99
8	ER2a	ExonRegion	0	3.18	7.06	2.86	8.48	4.30	16.71	3.67
9	E2_Da	NovelBoundary	0	0.00	3.86	3.87	3.03	1.87	24.04	2.29
10	E2a_E3a	KnownJunction	0	6.84	6.52	1.78	2.52	2.17	11.79	1.72
11	ER3a	ExonRegion	0	4.34	3.79	0.82	7.39	5.52	23.64	2.86
12	E3_Da	NovelBoundary	1	0.00	3.55	0.65	0.00	5.05	19.54	3.48
13	E3a_E4a	KnownJunction	0	3.40	1.58	0.00	6.72	4.22	24.68	4.37
14	I3	Intron	0	1.80	2.85	0.27	5.92	2.97	12.58	1.32
15	I3_AR1	ActiveIntronRegion	0	1.81	2.88	0.27	5.97	2.99	12.71	1.33
16	E4_Aa	NovelBoundary	0	5.82	0.00	5.06	14.58	4.45	11.71	5.65
17	ER4a	ExonRegion	0	1.96	2.65	0.00	3.54	5.98	17.07	3.78
18	E4_Da	NovelBoundary	0	2.75	4.65	2.36	15.63	5.51	16.83	7.12
19	E4a_E5a	KnownJunction	0	0.75	4.70	0.00	1.25	2.72	17.63	4.89
20	I4	Intron	0	2.36	2.63	2.09	5.77	4.67	13.99	2.91
21	I4_SR1	SilentIntronRegion	0	2.68	2.99	2.31	6.67	5.19	15.66	3.28
22	ER5a	ExonRegion	0	2.31	3.18	0.75	4.05	8.26	17.78	7.47
23	E5a_E6a	KnownJunction	0	2.50	1.42	1.51	3.98	8.81	16.48	5.19
24	I5	Intron	0	2.36	2.89	2.24	2.08	3.34	14.30	2.72
25	I5_SR1	SilentIntronRegion	0	2.10	2.84	2.32	2.10	3.67	16.31	2.63
26	I5_AR1	ActiveIntronRegion	0	3.29	3.10	2.03	2.07	2.32	7.96	3.08
27	E6a_E7a	KnownJunction	0	4.41	4.33	3.05	4.98	11.99	21.41	4.99
28	ER6a	ExonRegion	0	4.97	2.48	2.76	5.80	12.46	21.55	8.69
29	I6	Intron	0	2.15	4.05	3.10	5.54	4.84	17.05	2.64
30	I6_AR1	ActiveIntronRegion	0	2.18	4.10	3.15	5.60	4.90	17.28	2.68
31	E7_Aa	NovelBoundary	0	1.80	3.91	2.99	8.75	3.53	20.66	5.30
32	ER7a	ExonRegion	0	3.69	5.19	2.90	6.78	11.77	25.14	6.49
33	E7_Da	NovelBoundary	0	1.65	9.41	7.27	5.39	5.56	26.45	3.00
34	E7a_E8a	KnownJunction	0	1.85	3.10	0.69	4.44	5.60	25.06	8.00
35	I7	Intron	0	1.73	4.08	3.20	7.47	6.09	28.44	3.52
36	I7_AR1	ActiveIntronRegion	0	1.79	4.30	3.18	8.25	6.63	30.70	4.64
37	I7_SR1	SilentIntronRegion	0	1.67	3.77	3.29	6.18	5.23	24.84	1.47
38	E8_Aa	NovelBoundary	0	2.75	2.60	3.36	11.41	4.50	83.59	8.41
39	ER8a	ExonRegion	0	3.06	7.94	1.91	9.76	12.45	35.41	9.10
40	E8_Da	NovelBoundary	0	0.00	2.73	1.51	4.36	0.00	18.79	1.63
41	E8a_E9a	KnownJunction	0	2.69	8.38	3.12	8.91	16.25	40.04	11.85
42	E9_Aa	NovelBoundary	0	1.62	3.10	1.37	1.57	0.88	11.63	0.00
43	ER9a	ExonRegion	0	4.03	10.79	3.08	11.09	15.99	66.34	11.51
44	E9a_E10a	KnownJunction	1	1.60	8.43	1.95	6.15	12.84	59.92	5.53
45	ER10a	ExonRegion	0	11.25	8.95	5.34	14.95	16.29	79.00	10.19
46	E10a_E11a	KnownJunction	0	7.51	11.85	3.41	15.20	11.94	75.74	2.69
47	ER11a	ExonRegion	0	15.16	18.64	6.91	25.16	21.71	88.53	8.76
48	E11_Da	NovelBoundary	0	0.00	1.52	0.86	8.91	0.99	6.51	0.00
49	E11a_E12a	KnownJunction	0	11.68	10.72	2.51	14.41	24.11	69.41	4.06
50	ER12a	ExonRegion	0	3.16	3.07	3.29	15.04	5.54	25.17	2.97
51	IG35_SR2	SilentIntergenicRegion	0	3.29	4.37	5.78	1.40	0.87	10.03	1.89