Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PHF20	Gene	0	73.45	91.76	80.31	123.88	172.85	143.62	57.90
2	374012	Transcript	0	52.29	91.40	58.07	121.28	138.77	140.15	51.97
3	339089	Transcript	0	0.97	0.00	3.91	0.00	0.00	4.56	0.00
4	374000	Transcript	0	13.80	0.00	14.97	0.00	0.00	0.00	0.00
5	373994	Transcript	0	0.00	0.00	0.00	0.11	0.04	0.00	0.00
6	ER1a	ExonRegion	0	1.31	4.22	6.26	4.55	16.91	1.23	2.74
7	ER1b	ExonRegion	0	27.43	43.85	42.18	54.00	158.76	47.30	27.53
8	E1a_E2a	KnownJunction	0	50.32	94.42	74.12	101.27	199.04	102.46	49.21
9	I1_AR1	ActiveIntronRegion	0	17.08	10.58	23.62	8.34	14.69	4.95	10.20
10	I1_AR2	ActiveIntronRegion	1	31.18	41.62	19.11	48.42	36.80	43.48	27.95
11	I1_AR6	ActiveIntronRegion	1	13.90	8.50	15.46	2.28	14.86	3.68	11.88
12	ER2a	ExonRegion	0	42.38	103.71	49.31	116.61	93.20	116.22	35.00
13	E2a_E3a	KnownJunction	0	28.26	118.46	51.59	140.52	79.67	114.33	28.69
14	ER3a	ExonRegion	0	74.10	170.55	108.70	193.84	180.53	191.18	67.60
15	E3a_E4a	KnownJunction	0	64.19	140.87	86.06	188.07	111.09	205.34	62.89
16	E3a_E6a	NovelJunction	0	0.88	6.15	1.41	10.48	0.92	11.01	0.00
17	E3a_E7a	NovelJunction	0	2.34	10.96	1.97	8.75	3.00	6.65	0.00
18	E3a_E8a	NovelJunction	0	0.97	10.38	0.00	14.52	0.00	7.72	0.00
19	ER4a	ExonRegion	0	68.41	118.68	102.19	166.80	157.49	162.70	64.73
20	E4a_E6a	KnownJunction	0	74.82	82.91	102.82	127.36	189.98	121.32	51.74
21	ER5a	ExonRegion	0	0.00	0.00	0.00	0.11	0.04	0.00	0.00
22	ER6a	ExonRegion	0	80.71	90.70	107.69	128.25	160.31	143.55	58.18
23	E6a_E7a	KnownJunction	0	64.36	97.78	91.67	133.59	123.06	154.50	46.49
24	E6a_E8a	KnownJunction	0	0.97	0.00	3.91	0.00	0.00	4.56	0.00
25	ER7a	ExonRegion	0	79.33	117.79	120.36	137.20	141.57	152.74	61.62
26	E7_Da	KnownBoundary	0	66.86	96.60	110.74	109.77	147.93	156.14	59.16
27	E7a_E7b	KnownJunction	0	13.80	0.00	14.97	0.00	0.00	0.00	0.00
28	ER7b	ExonRegion	0	84.87	110.13	138.06	116.64	156.61	162.47	68.74
29	E7_Ab	KnownBoundary	0	91.93	105.58	131.26	96.44	156.71	145.39	65.09
30	ER7c	ExonRegion	0	101.70	101.26	122.88	101.75	169.70	135.26	67.04
31	E7b_E8a	KnownJunction	0	97.17	92.21	105.42	101.21	191.41	124.83	60.02
32	ER8a	ExonRegion	0	145.92	134.98	148.98	156.60	270.72	162.47	75.56
33	E8a_E9a	KnownJunction	1	192.20	157.21	183.78	173.68	255.31	190.79	73.94
34	E8a_E10a	NovelJunction	1	0.95	0.00	1.37	13.17	5.23	22.06	7.91
35	ER9a	ExonRegion	0	156.26	119.95	143.82	149.26	262.74	156.17	69.43
36	E9a_E10a	KnownJunction	1	130.33	112.91	109.88	108.77	304.80	112.61	48.33
37	ER10a	ExonRegion	1	154.85	123.61	119.39	162.69	272.42	141.79	61.39
38	E10a_E11a	KnownJunction	1	199.43	128.57	155.34	195.27	236.31	182.99	64.03
39	ER11a	ExonRegion	1	127.98	85.73	105.20	136.20	190.60	161.38	50.68
40	E11a_E12a	KnownJunction	0	43.06	53.23	51.86	97.18	51.20	150.24	35.53
41	ER12a	ExonRegion	0	38.34	70.09	50.09	121.54	63.76	152.20	34.00
42	E12_Da	NovelBoundary	0	12.33	77.74	16.18	146.70	22.04	163.96	11.39
43	E12b_E13a	KnownJunction	0	44.46	73.61	53.07	152.33	165.63	190.57	24.94
44	ER12b	ExonRegion	0	31.53	77.52	39.92	157.12	90.00	183.58	19.98
45	ER13a	ExonRegion	0	52.37	88.94	76.73	124.23	141.48	148.33	55.93
46	E13a_E14a	KnownJunction	0	64.72	104.32	78.25	132.69	167.82	158.15	73.00
47	ER14a	ExonRegion	0	61.54	116.42	75.18	133.43	188.18	158.60	65.23
48	E14a_E15a	KnownJunction	0	65.27	132.04	69.19	137.89	179.12	160.37	82.61
49	E14a_E16a	NovelJunction	0	0.00	2.47	3.61	3.90	0.00	10.34	1.16
50	ER15a	ExonRegion	0	74.90	131.63	71.73	152.18	200.99	143.83	73.73
51	E15a_E16a	KnownJunction	0	69.85	135.64	68.29	134.83	168.31	142.33	64.05
52	ER16a	ExonRegion	0	59.42	105.06	62.96	145.56	155.47	155.72	68.84
53	E16a_E17a	KnownJunction	0	40.44	87.04	53.03	123.83	125.82	152.28	61.50
54	ER17a	ExonRegion	0	35.17	81.41	38.81	116.55	96.34	117.87	45.87
55	E17a_E18a	KnownJunction	0	58.77	61.63	50.40	99.59	108.12	104.65	47.72
56	ER18a	ExonRegion	0	43.21	84.02	48.42	114.09	107.91	117.18	44.84
57	E18a_E19a	KnownJunction	0	65.14	99.81	62.76	98.88	123.61	164.01	40.93
58	ER19a	ExonRegion	0	68.52	79.05	74.10	112.68	184.61	143.67	59.68
59	IG41	Intergenic	0	6.47	3.58	5.98	5.60	1.75	8.68	2.27
60	IG41_SR1	SilentIntergenicRegion	0	6.57	3.64	6.07	5.69	1.78	8.81	2.31