Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PLCB4	Gene	0	30.47	10.69	8.24	6.66	57.13	11.03	1.34
2	407043	Transcript	0	2.47	1.80	0.52	2.45	3.69	1.71	0.00
3	378504	Transcript	0	7.46	0.00	1.45	1.38	3.18	0.00	0.00
4	278655	Transcript	0	0	0	0	0	0	0	0
5	334005	Transcript	0	0	0	0	0	0	0	0
6	378473	Transcript	0	0	0	0	0	0	0	0
7	355034	Transcript	0	0.00	0.00	0.00	0.00	0.35	0.00	0.00
8	378501	Transcript	0	0	0	0	0	0	0	0
9	378493	Transcript	0	0	0	0	0	0	0	0
10	ER1a	ExonRegion	0	1.42	2.11	0.30	1.49	1.72	0.49	0.00
11	E1a_E4a	KnownJunction	0	3.52	1.50	0.73	3.41	5.65	2.92	0.00
12	ER2a	ExonRegion	0	4.61	1.36	1.58	0.00	1.41	2.18	0.00
13	E2a_E4a	KnownJunction	0	11.13	2.65	3.26	0.00	2.35	4.64	0.00
14	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.71	0.00	0.00
15	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER4a	ExonRegion	0	17.80	7.15	4.48	8.93	22.42	6.34	0.26
17	E4a_E5a	KnownJunction	0	17.94	11.09	4.47	10.40	35.59	5.49	0.79
18	ER5a	ExonRegion	0	32.55	15.11	9.59	14.95	40.50	11.18	0.74
19	E5a_E6a	KnownJunction	0	44.35	15.79	10.88	17.69	37.69	20.74	0.73
20	ER6a	ExonRegion	0	34.98	18.13	8.79	14.81	39.31	16.36	0.81
21	E6a_E7a	KnownJunction	0	19.59	16.52	7.93	16.99	60.97	9.54	1.36
22	ER7a	ExonRegion	0	23.53	12.88	8.24	16.44	53.05	10.91	1.34
23	E7a_E8a	KnownJunction	0	28.39	10.38	6.11	12.73	63.99	18.95	1.48
24	ER8a	ExonRegion	0	38.54	16.40	7.71	7.66	57.97	16.12	1.09
25	E8a_E9a	KnownJunction	0	35.18	17.34	6.87	8.89	58.51	15.87	0.83
26	ER9a	ExonRegion	0	38.55	23.86	10.17	11.67	75.49	17.04	0.67
27	E9a_E10a	KnownJunction	0	57.50	24.83	13.61	10.48	79.58	19.99	1.43
28	ER10a	ExonRegion	0	49.89	15.37	10.44	4.06	72.99	13.53	0.30
29	E10_Da	NovelBoundary	0	13.10	6.28	2.64	4.09	11.30	6.91	0.56
30	E10a_E11a	KnownJunction	0	30.16	5.49	4.54	0.00	57.17	8.17	0.00
31	I10	Intron	0	12.77	5.29	3.56	4.90	8.34	4.01	0.20
32	I10_SR1	SilentIntronRegion	0	13.07	5.06	2.63	3.24	12.15	3.73	0.02
33	I10_AR1	ActiveIntronRegion	0	16.74	8.25	4.29	5.59	9.18	4.97	0.53
34	I10_AR3	ActiveIntronRegion	0	14.99	5.65	3.14	4.63	7.18	4.24	0.40
35	I10_SR4	SilentIntronRegion	0	14.39	3.67	1.89	1.44	8.34	5.05	0.41
36	I10_AR4	ActiveIntronRegion	0	18.12	5.58	3.35	4.92	8.08	3.90	0.20
37	I10_SR5	SilentIntronRegion	0	12.17	5.18	4.05	5.25	8.83	4.04	0.16
38	ER11a	ExonRegion	0	43.62	13.76	12.51	4.62	66.52	15.94	0.44
39	E11a_E12a	KnownJunction	0	44.46	9.14	10.04	5.85	82.78	17.02	1.66
40	ER12a	ExonRegion	0	33.80	13.11	10.58	6.20	52.45	9.09	1.40
41	E12a_E13a	KnownJunction	0	21.45	8.77	13.01	1.44	38.41	2.63	0.85
42	E12a_E14a	NovelJunction	0	29.61	11.93	5.75	6.01	12.45	8.07	0.00
43	ER13a	ExonRegion	0	25.85	8.52	11.81	1.68	47.82	6.85	1.66
44	E13a_E14a	KnownJunction	0	23.27	12.72	9.43	2.93	45.58	7.91	1.48
45	ER14a	ExonRegion	0	52.12	22.61	14.79	8.91	57.29	21.91	2.11
46	E14a_E15a	KnownJunction	0	56.83	25.85	16.87	12.16	57.01	18.87	2.24
47	ER15a	ExonRegion	0	42.06	19.70	9.56	9.82	56.45	17.53	1.50
48	E15a_E16a	KnownJunction	0	27.20	24.35	6.50	7.86	50.19	15.62	0.00
49	ER16a	ExonRegion	0	38.32	19.66	7.68	10.10	71.58	17.05	2.04
50	E16a_E17a	KnownJunction	0	47.42	18.97	15.10	15.39	57.61	12.19	0.70
51	ER17a	ExonRegion	0	39.66	20.42	12.26	11.16	56.55	15.28	1.96
52	E17a_E18a	KnownJunction	0	33.46	14.92	7.33	9.78	51.22	14.10	1.62
53	ER18a	ExonRegion	0	42.67	10.95	14.25	7.35	56.02	10.17	1.37
54	E18a_E19a	KnownJunction	0	44.71	11.43	16.12	10.62	97.35	8.28	1.78
55	ER19a	ExonRegion	0	34.09	10.43	13.97	7.14	47.90	11.01	0.57
56	E19a_E20a	KnownJunction	0	36.75	10.04	11.18	5.39	37.60	6.97	0.00
57	ER20a	ExonRegion	0	27.10	16.38	12.06	6.56	53.29	9.59	1.06
58	E20a_E21a	KnownJunction	0	23.28	19.05	12.20	6.18	57.29	7.02	0.00
59	ER21a	ExonRegion	0	28.03	12.26	7.34	4.68	47.95	6.79	1.51
60	E21a_E22a	KnownJunction	0	8.11	7.15	1.61	0.00	23.88	2.97	0.00
61	E21a_E23a	KnownJunction	0	8.04	10.04	2.33	1.57	7.56	4.26	1.20
62	ER22a	ExonRegion	0	13.49	4.08	1.77	9.49	28.28	6.88	0.06
63	E22a_E23a	KnownJunction	0	17.32	6.28	0.56	17.07	31.77	8.63	0.00
64	ER23a	ExonRegion	0	37.32	12.72	8.00	11.36	54.36	12.27	1.71
65	E23a_E24a	KnownJunction	0	44.11	19.94	7.67	10.54	55.70	14.77	0.67
66	ER24a	ExonRegion	0	37.95	16.52	9.55	6.95	60.32	9.23	1.06
67	E24a_E25a	KnownJunction	0	35.35	11.01	11.61	2.82	76.17	9.57	0.89
68	ER25a	ExonRegion	0	29.62	12.21	11.39	4.59	57.56	8.84	1.40
69	E25a_E26a	KnownJunction	0	20.33	12.58	9.40	6.23	45.11	3.75	0.00
70	ER26a	ExonRegion	0	25.25	12.59	8.92	4.75	52.48	8.89	2.50
71	E26a_E27a	KnownJunction	0	25.20	11.64	5.09	2.41	57.22	10.80	4.08
72	ER27a	ExonRegion	0	21.16	7.90	9.35	7.02	62.66	12.15	2.65
73	E27a_E28a	KnownJunction	0	17.64	8.85	4.11	11.89	60.88	10.45	2.87
74	ER28a	ExonRegion	0	34.51	12.98	10.28	9.55	73.61	13.08	2.54
75	E28a_E29a	KnownJunction	0	41.93	17.10	12.42	14.44	79.16	14.42	3.93
76	ER29a	ExonRegion	0	67.39	20.14	15.16	13.06	111.04	13.91	3.87
77	E29a_E30a	KnownJunction	0	46.73	22.12	13.45	5.69	113.90	19.24	3.70
78	ER30a	ExonRegion	0	37.69	21.98	12.92	7.71	70.55	11.53	2.40
79	E30a_E31a	KnownJunction	1	36.40	24.46	9.94	4.44	55.65	8.87	3.38
80	ER31a	ExonRegion	0	35.72	19.00	8.85	4.72	49.23	15.53	2.88
81	E31_Da	KnownBoundary	0	33.98	17.71	8.22	5.99	50.00	17.63	2.36
82	ER31b	ExonRegion	0	26.90	18.74	8.88	7.74	52.18	12.57	2.17
83	E31b_E32a	KnownJunction	0	17.87	12.85	3.03	3.06	36.86	18.22	0.89
84	ER32a	ExonRegion	0	22.84	13.24	8.32	6.91	45.76	16.01	0.50
85	E32a_E33a	KnownJunction	0	24.60	11.27	10.85	5.74	45.88	12.22	0.00
86	ER33a	ExonRegion	0	34.00	12.52	9.51	4.18	49.79	17.11	0.03
87	E33a_E34a	KnownJunction	0	34.53	11.64	6.16	6.64	58.21	15.57	0.00
88	ER34a	ExonRegion	0	28.84	15.12	10.54	7.05	56.69	13.85	1.24
89	E34a_E35a	KnownJunction	0	26.90	9.96	19.01	9.27	37.88	6.14	2.25
90	ER35a	ExonRegion	0	40.34	12.82	13.25	9.12	95.24	13.50	2.40
91	E35a_E36a	KnownJunction	0	50.04	14.53	5.27	4.33	120.70	19.14	2.39
92	E35a_E37a	KnownJunction	0	7.46	0.00	1.45	1.38	3.18	0.00	0.00
93	E36_Aa	NovelBoundary	0	16.01	1.39	0.00	1.49	0.88	1.31	0.00
94	ER36a	ExonRegion	0	61.53	17.51	13.16	8.68	113.54	18.33	2.86
95	E36a_E37a	KnownJunction	0	65.04	15.47	10.63	5.04	132.05	15.70	2.11
96	ER37a	ExonRegion	0	52.29	12.98	13.46	6.03	117.24	13.22	1.53
97	E37a_E38a	KnownJunction	0	40.84	13.29	14.67	8.32	109.16	6.62	3.10
98	ER38a	ExonRegion	0	43.68	9.38	10.06	11.35	120.67	8.90	2.00
99	E38a_E39a	KnownJunction	0	44.28	5.49	6.93	11.73	116.23	12.94	1.40
100	ER39a	ExonRegion	0	35.86	7.71	10.08	10.25	74.39	16.47	1.85
101	E39a_E40a	KnownJunction	0	15.86	9.64	7.34	10.67	49.06	4.53	0.77
102	E39a_E41a	KnownJunction	0	1.47	0.00	1.67	0.00	2.95	0.00	0.00
103	ER40a	ExonRegion	0	22.91	5.91	6.46	12.23	53.25	9.41	1.06
104	E40a_E41a	KnownJunction	0	22.10	5.78	3.00	8.02	56.30	11.01	1.39
105	ER41a	ExonRegion	0	28.35	6.58	7.16	5.53	64.72	11.40	1.26
106	E41_Da	KnownBoundary	0	0.58	0.00	1.52	0.00	0.99	0.00	0.00
107	ER41b	ExonRegion	0	1.63	0.22	0.39	0.22	0.45	0.00	0.00