Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C1orf125	Gene	0	0.79	0.07	0.21	0.23	0.32	0.30	0.27
2	359183	Transcript	0	1.07	0.00	0.00	0.00	0.61	0.68	0.34
3	367618	Transcript	0	0	0	0	0	0	0	0
4	360322	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	IG39_AR1	ActiveIntergenicRegion	0	23.36	8.88	17.52	10.71	5.12	36.00	26.34
6	IG39_SR1	SilentIntergenicRegion	0	17.02	3.06	14.06	1.87	2.68	23.67	11.72
7	IG39_AR2	ActiveIntergenicRegion	0	20.63	3.91	13.02	2.84	2.83	17.28	14.08
8	IG39_AR3	ActiveIntergenicRegion	0	19.88	6.23	9.74	3.74	3.34	16.55	22.35
9	IG39_AR4	ActiveIntergenicRegion	0	10.84	5.68	12.64	3.02	1.99	19.06	16.60
10	IG39_SR2	SilentIntergenicRegion	0	7.62	4.70	7.03	1.32	2.10	18.75	12.36
11	IG39_AR5	ActiveIntergenicRegion	0	19.91	7.53	12.05	7.73	4.05	47.49	19.52
12	ER1a	ExonRegion	0	0.33	0.65	1.09	0.67	0.15	0.00	0.18
13	E1a_E2a	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	0.70	0.00	0.00	0.47	0.18	0.46	0.00
15	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER3a	ExonRegion	0	0.34	0.53	0.50	1.07	0.11	0.00	0.59
17	E3a_E4a	KnownJunction	0	0.75	0.00	0.00	0.00	1.15	0.00	0.00
18	ER4a	ExonRegion	0	0.56	0.00	0.00	0.04	0.25	0.00	0.99
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	0	0.15	0.00	0.00	0.00	0.00	0.33	0.81
21	E5a_E6a	KnownJunction	0	0.92	0.00	0.00	0.00	0.00	1.66	0.00
22	ER6a	ExonRegion	0	1.08	0.00	0.00	0.00	0.48	1.70	0.34
23	E6a_E7a	KnownJunction	0	0.63	0.00	0.00	0.00	0.00	0.00	0.89
24	ER7a	ExonRegion	0	0.80	0.00	0.00	0.00	0.00	0.22	0.47
25	E7a_E8a	KnownJunction	0	0.92	0.00	0.00	0.00	0.00	1.10	0.00
26	ER8a	ExonRegion	0	0.31	0.00	0.00	0.00	0.00	0.79	0.00
27	E8a_E9a	KnownJunction	0	0.82	0.00	0.00	0.00	0.00	0.00	0.00
28	ER9a	ExonRegion	0	1.56	0.00	0.42	0.00	0.00	0.76	0.00
29	E9a_E10a	KnownJunction	0	2.42	0.00	0.00	0.00	0.00	0.00	0.00
30	ER10a	ExonRegion	0	1.70	0.00	0.00	0.00	0.29	0.66	0.01
31	E10a_E11a	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	0.00
32	ER11a	ExonRegion	0	0.78	0.00	0.00	0.00	0.00	0.00	0.46
33	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER12a	ExonRegion	0	0.48	0.00	0.43	0.78	0.00	0.00	0.85
35	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER13a	ExonRegion	0	0.00	0.00	0.78	0.00	0.27	0.41	0.65
37	E13a_E14a	KnownJunction	0	0.00	0.00	0.89	0.00	1.11	1.66	1.38
38	ER14a	ExonRegion	0	0.88	0.00	0.73	0.61	0.13	0.86	0.24
39	E14a_E15a	KnownJunction	0	0.93	0.00	0.73	0.00	0.90	1.07	0.00
40	ER15a	ExonRegion	0	1.70	0.00	0.18	0.00	1.36	0.15	0.00
41	E15a_E16a	KnownJunction	0	2.67	0.00	0.00	0.00	1.11	0.00	0.00
42	ER16a	ExonRegion	0	2.00	0.00	0.00	0.00	0.80	0.00	0.29
43	E16a_E17a	KnownJunction	0	1.00	0.00	0.00	0.00	1.04	0.00	0.79
44	E16a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	E17_Aa	NovelBoundary	0	22.92	26.85	14.15	3.96	7.22	15.14	23.26
46	ER17a	ExonRegion	0	2.20	0.00	0.00	0.00	0.79	0.39	0.25
47	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.63	0.00
48	ER18a	ExonRegion	0	1.47	0.00	0.52	0.48	0.62	0.65	0.32
49	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.77
50	ER19a	ExonRegion	0	0.89	0.00	0.00	0.00	0.00	0.00	0.38
51	E19a_E20a	KnownJunction	0	2.34	0.00	0.00	0.00	0.00	0.00	0.00
52	ER20a	ExonRegion	0	0.46	0.00	0.00	0.00	0.00	0.00	0.00
53	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER21a	ExonRegion	0	0.59	0.00	0.00	0.00	0.00	0.00	0.00
55	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E21a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER22a	ExonRegion	0	1.10	0.00	0.00	0.00	0.54	0.00	0.15
58	E22a_E23a	KnownJunction	0	1.69	0.00	0.00	0.00	1.18	0.00	0.79
59	ER23a	ExonRegion	0	0.33	0.00	0.00	0.00	0.45	0.31	0.31
60	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	1.13	1.61	0.00
61	ER24a	ExonRegion	0	1.49	0.00	0.00	0.00	0.46	1.09	0.27
62	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	2.35	1.63	0.89
63	ER25a	ExonRegion	0	0.00	0.00	0.00	0.00	1.95	0.44	0.28
64	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	1.01	0.00	0.00
65	ER26a	ExonRegion	0	0.00	0.00	0.00	0.00	0.39	0.00	0.22
66	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER27a	ExonRegion	0	0.00	0.00	0.00	0.43	0.00	0.00	0.00