Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RABGAP1L	Gene	0	17.62	16.91	23.91	18.94	68.79	17.71	34.66
2	367689	Transcript	0	0	0	0	0	0	0	0
3	357444	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	407735	Transcript	0	0.00	0.00	0.00	0.00	0.67	0.00	0.06
5	251507	Transcript	0	0	0	0	0	0	0	0
6	367691	Transcript	0	0.98	0.15	0.70	0.37	0.57	0.28	1.29
7	367692	Transcript	0	0	0	0	0	0	0	0
8	367690	Transcript	0	5.14	4.66	5.48	6.28	9.27	5.02	4.13
9	367688	Transcript	0	0.00	0.00	0.68	0.00	0.00	0.00	0.00
10	325589	Transcript	0	0	0	0	0	0	0	0
11	325594	Transcript	0	0.00	1.10	1.31	3.36	0.00	0.00	0.00
12	367687	Transcript	0	2.43	7.04	2.89	1.94	36.88	3.36	3.48
13	347255	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	367686	Transcript	0	1.87	6.55	0.00	5.23	4.00	10.27	3.56
15	405999	Transcript	0	4.34	2.67	0.72	0.42	35.83	0.71	2.23
16	392064	Transcript	0	0	0	0	0	0	0	0
17	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.07	0.00
18	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	1.03	0.00	0.00	0.62
20	ER1b	ExonRegion	0	0.00	0.00	0.00	0.48	0.00	0.00	0.45
21	ER1c	ExonRegion	0	7.32	4.56	7.77	8.60	1.50	8.30	7.06
22	E1a_E2a	KnownJunction	0	5.04	8.85	4.74	5.23	3.25	13.37	4.47
23	ER2a	ExonRegion	0	10.96	11.26	8.97	13.20	2.52	17.52	15.14
24	E2_Ab	KnownBoundary	0	10.20	9.48	9.02	16.01	2.03	18.89	15.15
25	E2_Da	KnownBoundary	0	14.75	13.32	20.61	11.38	1.87	24.31	37.75
26	E2a_E3a	KnownJunction	0	1.24	1.63	3.87	0.00	0.00	0.00	1.42
27	ER2b	ExonRegion	0	16.49	16.17	20.09	19.38	1.31	29.00	34.17
28	ER2c	ExonRegion	0	45.55	33.52	73.24	41.31	13.86	55.45	64.59
29	E2b_E3a	KnownJunction	0	55.69	44.11	79.61	62.85	30.66	82.65	69.19
30	ER3a	ExonRegion	0	68.22	47.34	109.24	60.93	24.45	64.89	83.52
31	E3a_E4a	KnownJunction	0	62.04	48.68	104.60	66.70	27.80	81.90	85.36
32	ER4a	ExonRegion	0	54.20	41.56	86.58	61.72	26.15	43.86	86.34
33	E4a_E5a	KnownJunction	0	29.42	36.83	58.80	38.17	31.91	41.81	76.07
34	ER5a	ExonRegion	0	28.20	29.15	71.04	57.23	29.45	40.35	93.62
35	E5_Da	NovelBoundary	1	7.44	5.54	19.00	4.55	2.86	4.53	2.01
36	E5a_E6a	KnownJunction	0	18.28	12.85	43.56	22.78	18.47	28.35	56.57
37	I5_AR2	ActiveIntronRegion	0	17.11	12.76	20.01	19.06	16.23	12.55	5.61
38	I5_SR3	SilentIntronRegion	0	15.66	9.54	19.67	8.63	12.28	10.92	3.12
39	I5_AR3	ActiveIntronRegion	0	2.83	2.58	6.37	3.25	3.06	8.67	2.44
40	ER6a	ExonRegion	1	23.73	12.19	59.33	34.05	22.21	24.43	92.58
41	E6a_E7a	KnownJunction	0	0.58	0.00	0.00	0.00	0.00	0.00	0.00
42	E6a_E7b	KnownJunction	0	21.16	12.82	51.75	28.72	13.83	18.73	55.48
43	ER7a	ExonRegion	0	1.37	0.30	1.39	0.74	1.14	0.56	2.59
44	E7_Ab	KnownBoundary	0	1.03	0.00	0.00	0.00	1.04	0.00	1.98
45	ER7b	ExonRegion	1	34.78	7.64	57.91	27.38	24.05	28.31	92.08
46	E7a_E8a	KnownJunction	1	27.42	5.91	43.77	12.84	23.70	33.66	90.79
47	ER8a	ExonRegion	1	24.48	9.12	33.41	16.94	25.32	28.40	84.11
48	E8a_E10a	KnownJunction	1	27.86	9.80	39.66	24.65	16.85	26.02	77.98
49	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.45	0.00	1.14
50	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER10a	ExonRegion	0	33.75	16.77	45.61	30.30	22.01	34.59	98.96
52	E10a_E11a	KnownJunction	0	16.34	14.45	34.89	32.18	27.89	29.18	68.32
53	ER11a	ExonRegion	0	21.24	17.95	32.99	27.24	24.36	27.07	66.35
54	E11a_E12a	KnownJunction	1	15.32	9.64	23.12	13.38	23.19	36.50	53.89
55	ER12a	ExonRegion	1	17.30	8.65	26.87	24.15	19.98	18.88	58.28
56	E12a_E13a	KnownJunction	0	22.95	8.22	28.71	22.30	25.24	17.07	53.17
57	ER13a	ExonRegion	1	25.89	8.13	33.41	28.26	33.04	22.07	73.95
58	E13a_E14a	KnownJunction	1	28.51	7.88	43.17	15.69	18.97	24.20	76.09
59	ER14a	ExonRegion	1	21.33	5.45	31.33	23.57	16.89	16.25	71.40
60	E14a_E15a	KnownJunction	0	1.37	0.00	0.00	1.68	1.01	0.00	1.22
61	E14a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	E14a_E17a	KnownJunction	1	25.67	3.60	41.60	21.32	20.61	10.99	78.61
63	E15_Aa	NovelBoundary	0	56.68	63.08	35.61	36.71	10.30	32.78	24.94
64	ER15a	ExonRegion	1	34.57	34.56	43.95	31.98	47.23	13.60	28.84
65	E15_Da	KnownBoundary	0	304.64	355.87	393.53	387.59	99.33	251.73	253.95
66	ER15b	ExonRegion	0	15.42	13.98	16.44	18.85	27.37	15.06	11.26
67	ER16a	ExonRegion	0	1.23	0.00	2.08	0.39	0.46	0.26	2.62
68	ER16b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER17a	ExonRegion	1	21.27	4.44	34.79	21.84	23.93	12.51	67.15
70	E17a_E18a	KnownJunction	1	19.74	4.60	30.61	26.66	16.69	14.28	60.11
71	ER18a	ExonRegion	1	20.10	6.38	33.06	20.25	17.24	13.89	62.31
72	E18a_E19a	KnownJunction	1	16.76	5.02	30.45	24.27	24.07	18.22	71.06
73	ER19a	ExonRegion	1	20.77	3.82	31.80	29.01	19.22	17.81	65.62
74	E19a_E22a	KnownJunction	1	20.60	7.12	26.00	42.72	17.70	16.32	58.17
75	ER20a	ExonRegion	0	0.00	0.00	0.68	0.00	0.00	0.00	0.00
76	ER20b	ExonRegion	0	0.00	0.00	0.22	0.00	0.21	0.00	0.22
77	E20_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.64
78	ER20c	ExonRegion	0	0.00	0.00	0.00	0.00	0.59	0.00	0.43
79	E20a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
80	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
81	ER21b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
82	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
83	E21b_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	ER21c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
85	ER22a	ExonRegion	1	18.10	8.01	40.14	28.42	19.52	26.55	70.18
86	E22a_E23a	KnownJunction	1	11.63	8.77	30.45	27.55	15.33	13.88	52.17
87	ER23a	ExonRegion	1	19.39	6.22	37.26	27.02	18.97	14.10	68.36
88	E23a_E25a	KnownJunction	0	19.18	4.10	35.28	17.64	24.64	12.46	57.63
89	I23_AR4	ActiveIntronRegion	0	3.13	6.84	2.55	4.50	2.95	9.40	1.22
90	E24_Aa	NovelBoundary	0	3.20	9.93	0.70	4.01	4.63	11.12	2.28
91	ER24a	ExonRegion	0	1.20	6.97	0.00	6.53	4.86	9.00	1.63
92	E24a_E25a	KnownJunction	0	2.54	6.12	0.00	3.93	3.14	11.55	5.49
93	ER25a	ExonRegion	1	15.59	15.76	40.12	19.66	17.76	27.74	74.13
94	E25a_E27a	KnownJunction	0	0.00	1.10	1.31	3.36	0.00	0.00	0.00
95	E25a_E28a	KnownJunction	0	14.05	15.71	24.86	23.76	16.57	21.33	54.26
96	I25_AR3	ActiveIntronRegion	0	7.45	1.21	7.45	2.49	2.43	1.23	8.23
97	I25_AR6	ActiveIntronRegion	0	3.48	3.34	5.05	2.66	2.07	7.97	3.02
98	I25_AR3	ActiveIntronRegion	0	0.63	1.04	1.98	0.00	72.14	1.64	2.52
99	E26_Aa	NovelBoundary	0	8.56	1.21	1.29	3.93	111.53	0.00	2.35
100	ER26a	ExonRegion	0	3.45	2.70	0.92	0.01	64.13	0.55	2.93
101	E26a_E27a	KnownJunction	0	7.81	4.60	0.00	0.00	31.79	0.00	1.63
102	I26_SR1	SilentIntronRegion	0	4.08	0.83	4.46	0.61	14.91	1.38	1.85
103	ER27a	ExonRegion	1	9.61	23.26	2.92	6.43	247.98	3.21	3.34
104	E27a_E28a	KnownJunction	1	5.69	30.21	0.89	4.90	294.50	2.92	0.85
105	I27	Intron	0	2.40	0.76	2.32	0.51	16.06	0.61	1.97
106	I27_SR1	SilentIntronRegion	0	3.13	0.79	2.73	0.61	19.21	0.58	2.34
107	I27_AR1	ActiveIntronRegion	0	1.85	3.64	4.94	1.25	17.29	1.51	1.63
108	I27_AR2	ActiveIntronRegion	0	2.61	1.29	3.97	0.67	18.43	2.26	2.85
109	I27	Intron	0	2.89	1.79	2.66	1.03	17.62	1.06	2.15
110	I27_SR1	SilentIntronRegion	0	2.40	1.24	3.53	1.00	17.13	1.63	2.71
111	I27_AR1	ActiveIntronRegion	0	3.00	1.55	1.75	0.03	27.01	0.08	2.22
112	I27_SR2	SilentIntronRegion	0	2.52	2.94	2.45	1.58	25.05	0.00	1.91
113	I27_SR3	SilentIntronRegion	0	2.97	1.85	2.17	0.69	16.70	1.19	2.00
114	I27_AR3	ActiveIntronRegion	0	4.44	2.22	5.58	2.91	19.47	0.61	2.57
115	I27_SR4	SilentIntronRegion	0	2.85	0.84	4.10	1.26	19.32	0.62	2.79
116	I27_SR1	SilentIntronRegion	0	2.19	3.29	2.60	1.30	15.89	1.95	1.91
117	I27_AR6	ActiveIntronRegion	0	3.09	3.85	3.56	2.33	14.45	2.49	2.69
118	I27_SR7	SilentIntronRegion	0	2.64	3.22	2.64	1.61	14.34	1.19	2.86
119	ER28a	ExonRegion	1	22.46	58.14	30.69	27.29	269.54	38.65	66.88
120	E28a_E30a	KnownJunction	1	7.79	21.15	15.98	5.34	36.86	22.22	32.19
121	E28a_E31a	KnownJunction	1	17.44	47.66	18.70	27.74	209.60	15.68	38.01
122	ER29a	ExonRegion	0	0.00	0.00	0.00	0.00	0.67	0.00	0.06
123	ER30a	ExonRegion	1	9.78	21.14	14.68	8.31	35.90	26.89	36.16
124	ER30b	ExonRegion	1	8.86	16.89	9.40	7.00	61.15	18.05	22.07
125	E30_Ab	KnownBoundary	1	11.63	13.14	9.18	4.66	29.44	21.25	12.11
126	ER30c	ExonRegion	0	9.70	9.12	8.00	4.96	39.70	12.00	10.71
127	E30_Db	NovelBoundary	0	3.59	1.60	1.28	1.30	36.75	0.00	4.21
128	E30b_E31a	KnownJunction	0	2.05	1.50	1.52	1.68	1.18	1.05	0.00
129	ER30d	ExonRegion	0	4.61	1.21	3.76	1.25	23.49	4.90	5.85
130	ER30e	ExonRegion	0	1.76	0.69	1.26	1.25	11.57	1.58	2.12
131	I30_SR1	SilentIntronRegion	0	2.05	3.96	1.37	0.56	16.33	1.46	2.90
132	I30_AR1	ActiveIntronRegion	0	2.74	1.76	2.45	0.70	14.36	1.57	3.98
133	I30_AR2	ActiveIntronRegion	0	1.80	1.18	2.54	0.82	15.39	0.84	3.43
134	I30_AR3	ActiveIntronRegion	0	3.30	0.82	2.33	1.51	16.15	0.87	4.96
135	ER31a	ExonRegion	1	29.20	43.11	21.38	26.84	293.50	19.28	48.61
136	E31a_E32a	KnownJunction	0	31.18	43.35	20.42	33.76	324.88	27.55	38.57
137	ER32a	ExonRegion	0	29.46	49.77	25.57	30.92	329.23	31.90	42.38
138	E32a_E33a	KnownJunction	0	30.41	47.26	22.81	34.24	338.14	25.16	48.70
139	ER33a	ExonRegion	0	31.09	46.92	19.56	23.91	320.25	27.96	45.93
140	E33a_E34a	KnownJunction	1	26.19	45.45	18.84	23.35	320.55	32.32	29.19
141	ER34a	ExonRegion	0	16.77	44.44	10.90	24.30	286.44	23.29	27.11
142	E34a_E35a	KnownJunction	1	12.57	41.30	8.29	19.59	291.76	16.00	30.40
143	E34a_E36a	NovelJunction	0	1.44	3.21	3.97	2.36	19.87	0.00	6.88
144	I34_AR1	ActiveIntronRegion	0	1.67	2.35	3.32	0.98	13.82	1.21	2.81
145	ER35a	ExonRegion	0	20.68	39.50	11.99	20.10	262.35	23.65	30.01
146	E35a_E36a	KnownJunction	0	15.89	25.48	12.10	25.68	264.12	13.83	19.95
147	ER36a	ExonRegion	0	21.67	25.03	15.35	18.35	210.84	19.68	28.41
148	E36_Da	KnownBoundary	0	16.74	15.45	13.16	4.04	167.64	6.46	16.84
149	ER36b	ExonRegion	1	17.95	21.28	14.81	4.36	167.51	8.29	19.34
150	E36_Db	KnownBoundary	0	9.70	12.69	9.18	2.95	90.39	4.61	12.48
151	E36_Dc	KnownBoundary	0	8.45	9.38	7.27	4.96	92.51	5.68	16.18
152	ER36c	ExonRegion	1	14.91	19.80	13.68	5.24	148.36	11.89	23.27
153	ER36d	ExonRegion	1	14.67	41.70	13.18	12.33	158.61	16.76	29.45
154	E36_Dd	KnownBoundary	1	12.10	50.68	19.28	11.81	147.77	13.40	28.68
155	ER36e	ExonRegion	1	9.72	28.15	11.54	7.75	147.50	13.42	13.91
156	IG9	Intergenic	0	23.07	21.32	17.33	12.57	230.64	19.14	32.37
157	IG9_AR1	ActiveIntergenicRegion	0	23.07	21.32	17.34	12.58	230.68	19.15	32.38