Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	USP21	Gene	0	52.55	52.90	55.76	33.35	62.07	29.03	29.48
2	289865	Transcript	0	0	0	0	0	0	0	0
3	368002	Transcript	0	0	0	0	0	0	0	0
4	358980	Transcript	0	0	0	0	0	0	0	0
5	401725	Transcript	0	0	0	0	0	0	0	0
6	368001	Transcript	0	0	0	0	0	0	0	0
7	401988	Transcript	0	29.14	26.63	22.47	19.19	0.00	12.50	17.87
8	IG15	Intergenic	0	24.18	40.32	8.26	15.54	1.90	15.42	2.44
9	IG15_AR1	ActiveIntergenicRegion	0	27.81	45.97	9.68	17.18	2.17	17.41	2.88
10	IG15_SR1	SilentIntergenicRegion	0	4.26	9.63	0.40	6.87	0.41	4.66	0.00
11	ER1a	ExonRegion	0	0.00	3.64	0.00	0.00	0.81	0.00	0.00
12	ER1b	ExonRegion	0	0.34	7.97	0.46	0.12	1.19	1.08	0.35
13	E1_Ac	KnownBoundary	0	2.62	12.11	4.04	1.14	0.88	0.00	0.00
14	E1_Ad	KnownBoundary	0	4.17	15.95	3.32	3.55	7.58	9.43	3.73
15	ER1c	ExonRegion	1	1.94	13.72	2.03	2.71	4.05	3.82	0.67
16	ER1d	ExonRegion	0	3.25	11.77	5.05	6.53	4.01	6.19	3.75
17	E1a_E2a	KnownJunction	0	3.24	4.26	4.61	4.36	1.91	1.53	4.72
18	E1a_E3a	KnownJunction	0	3.14	12.45	6.16	10.02	5.88	6.27	4.70
19	I1	Intron	1	18.28	27.32	7.10	14.92	5.36	13.04	3.10
20	I1_AR1	ActiveIntronRegion	1	18.31	27.36	7.12	14.95	5.37	13.06	3.10
21	E2_Aa	NovelBoundary	0	35.38	39.30	20.06	21.08	14.75	20.66	9.54
22	ER2a	ExonRegion	0	33.12	39.14	24.79	17.71	20.03	16.51	10.38
23	E2_Da	NovelBoundary	1	20.38	17.02	9.56	25.09	2.93	4.53	6.74
24	E2a_E3a	KnownJunction	0	23.75	43.61	18.09	16.23	19.85	15.79	12.14
25	E3_Ab	NovelBoundary	0	28.47	49.81	24.77	45.87	23.28	26.75	22.43
26	ER3a	ExonRegion	0	28.75	52.68	25.71	35.26	27.46	21.51	22.20
27	ER3b	ExonRegion	0	67.69	76.36	62.60	47.36	59.80	37.17	34.92
28	E3_Da	KnownBoundary	0	26.07	26.69	28.35	27.61	22.52	11.74	14.06
29	E3a_E3c	KnownJunction	1	29.79	32.94	17.32	31.62	0.00	7.37	18.50
30	E3_Ac	KnownBoundary	0	22.70	28.56	29.89	20.67	18.30	8.98	21.20
31	ER3c	ExonRegion	0	50.56	69.25	61.78	60.10	57.66	25.99	40.07
32	ER3d	ExonRegion	0	47.24	68.39	67.12	56.99	67.72	25.46	41.90
33	E3b_E4a	KnownJunction	0	33.40	54.30	66.49	48.03	76.12	33.12	35.37
34	I3_AR1	ActiveIntronRegion	1	21.52	8.64	6.77	12.47	0.90	3.68	1.27
35	I3_SR2	SilentIntronRegion	1	18.92	11.47	5.73	8.11	0.19	2.43	0.84
36	E4_Aa	NovelBoundary	0	4.91	2.92	2.03	0.00	4.56	8.04	1.73
37	ER4a	ExonRegion	0	49.76	72.66	91.68	41.86	79.12	36.85	41.61
38	E4_Da	NovelBoundary	0	43.01	62.13	72.28	28.45	72.59	30.61	31.04
39	E4a_E4b	KnownJunction	0	21.33	19.02	21.56	6.10	0.00	12.33	10.26
40	E4b_E5a	KnownJunction	0	48.00	54.38	66.78	23.70	82.58	21.84	24.46
41	ER4b	ExonRegion	0	64.86	77.02	101.74	39.15	87.14	40.46	40.21
42	ER4c	ExonRegion	0	75.26	82.21	105.37	39.83	83.01	39.03	42.50
43	E5a_E5b	KnownJunction	0	36.30	27.93	28.53	19.86	0.00	17.80	24.84
44	E5_Ab	NovelBoundary	0	76.97	57.51	87.99	32.89	60.86	41.54	41.82
45	ER5a	ExonRegion	0	80.26	72.59	102.49	37.72	78.80	43.58	47.79
46	ER5b	ExonRegion	0	81.15	67.55	96.87	42.40	74.99	43.65	44.66
47	ER5c	ExonRegion	0	65.62	54.29	81.89	32.95	78.11	39.84	39.73
48	E5_Db	NovelBoundary	1	45.25	15.24	26.64	17.26	12.36	16.88	5.25
49	E5b_E6a	KnownJunction	1	51.04	59.16	83.12	16.25	75.34	22.65	37.13
50	E5b_E7a	NovelJunction	0	5.72	9.22	3.97	5.99	1.18	11.04	0.66
51	I5	Intron	1	40.22	16.86	22.09	16.02	8.40	17.79	2.73
52	I5_SR1	SilentIntronRegion	1	40.73	17.08	22.38	16.23	8.48	17.99	2.77
53	E6_Aa	NovelBoundary	1	32.23	15.08	12.60	4.96	2.19	10.91	1.89
54	ER6a	ExonRegion	0	63.92	65.47	84.38	35.63	70.69	27.20	40.13
55	E6_Da	NovelBoundary	0	26.49	7.86	13.48	13.17	2.97	5.36	6.09
56	E6a_E7a	KnownJunction	0	40.82	43.69	49.07	22.43	78.45	20.72	28.06
57	I6	Intron	0	16.21	11.98	13.31	8.87	5.54	10.64	2.66
58	I6_SR1	SilentIntronRegion	0	16.37	12.10	13.45	8.96	5.60	10.74	2.68
59	E7_Aa	NovelBoundary	1	22.46	20.49	7.87	7.94	3.04	13.96	4.49
60	ER7a	ExonRegion	0	38.16	53.65	42.50	38.98	71.22	33.77	31.92
61	E7a_E8a	KnownJunction	0	48.58	52.99	46.93	36.19	80.85	30.36	36.06
62	ER8a	ExonRegion	0	64.73	50.16	55.93	31.79	91.95	26.92	28.09
63	E8_Da	NovelBoundary	0	10.75	7.07	5.02	5.42	2.03	12.89	2.04
64	E8a_E9a	KnownJunction	0	52.44	28.53	48.87	23.27	51.34	17.69	19.02
65	I8	Intron	0	14.15	6.78	6.77	6.96	4.14	18.01	1.58
66	I8_AR1	ActiveIntronRegion	1	14.25	6.83	6.82	7.01	4.17	18.15	1.59
67	E9_Aa	NovelBoundary	1	15.39	10.46	8.48	12.87	3.57	14.23	1.73
68	ER9a	ExonRegion	0	52.85	47.01	53.85	24.99	87.08	27.63	38.00
69	E9_Da	NovelBoundary	1	28.46	17.44	12.32	11.97	10.19	21.01	1.61
70	E9a_E10a	KnownJunction	1	48.88	52.49	50.43	26.31	78.61	8.74	30.08
71	I9	Intron	0	11.94	11.64	7.58	8.30	6.99	14.25	2.24
72	I9_AR1	ActiveIntronRegion	0	12.04	11.76	7.65	8.38	7.07	14.39	2.26
73	E10_Aa	NovelBoundary	1	55.48	20.99	34.91	20.18	31.24	19.08	1.43
74	ER10a	ExonRegion	0	79.20	63.17	81.39	48.17	104.01	37.82	34.88
75	E10_Da	NovelBoundary	0	22.35	11.61	18.84	13.82	17.64	19.14	7.84
76	E10a_E11a	KnownJunction	0	60.73	56.22	77.04	34.60	121.42	33.61	45.76
77	I10	Intron	0	27.80	11.71	14.08	10.68	15.70	14.79	4.33
78	I10_AR1	ActiveIntronRegion	0	27.98	11.79	14.17	10.75	15.80	14.89	4.36
79	E11_Aa	NovelBoundary	1	53.01	24.56	30.55	17.61	23.70	23.53	7.41
80	ER11a	ExonRegion	0	59.93	55.85	73.74	30.97	107.57	30.82	35.69
81	E11_Da	NovelBoundary	1	23.23	15.18	16.40	14.52	22.91	9.51	3.87
82	E11a_E12a	KnownJunction	0	42.34	32.87	59.15	12.79	79.99	13.56	26.90
83	E11_Db	NovelBoundary	1	32.96	17.00	20.81	18.58	21.25	9.97	5.37
84	E11b_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
85	ER11b	ExonRegion	0	4.76	1.94	5.01	9.48	5.83	2.21	0.67
86	I11	Intron	0	34.03	19.08	29.61	19.14	25.56	21.76	6.38
87	I11_AR1	ActiveIntronRegion	0	34.33	19.23	29.87	19.30	25.79	21.93	6.44
88	E12_Aa	NovelBoundary	0	11.88	8.72	17.92	18.07	20.17	12.54	4.50
89	E12_Ab	NovelBoundary	1	33.30	6.91	37.74	10.43	11.64	17.31	4.44
90	ER12a	ExonRegion	0	47.26	32.40	60.51	19.74	76.80	16.55	29.68
91	ER12b	ExonRegion	0	62.13	60.54	67.47	38.97	101.35	31.11	39.23
92	E12_Da	NovelBoundary	0	14.25	13.66	10.89	9.67	8.32	24.68	9.87
93	E12a_E13a	KnownJunction	0	58.85	51.89	76.34	25.33	132.00	18.47	46.12
94	E12a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
95	E13_Aa	NovelBoundary	1	17.22	23.22	7.86	22.95	17.66	28.06	2.35
96	ER13a	ExonRegion	0	74.95	60.60	85.96	33.32	118.01	26.37	49.57
97	E13_Ab	KnownBoundary	0	81.00	72.25	95.81	35.73	90.39	38.86	52.12
98	ER13b	ExonRegion	0	68.55	73.18	72.37	36.73	76.35	32.57	43.48
99	E13_Da	NovelBoundary	1	36.57	17.26	11.11	31.72	17.89	25.27	5.92
100	E13a_E14a	KnownJunction	0	53.24	52.99	43.50	26.47	63.67	23.48	30.07
101	I13	Intron	1	16.15	11.70	7.29	11.12	6.73	19.65	2.39
102	I13_AR1	ActiveIntronRegion	0	16.29	11.80	7.35	11.22	6.78	19.80	2.42
103	E14_Aa	NovelBoundary	1	22.97	21.96	12.32	23.22	6.39	35.88	0.70
104	ER14a	ExonRegion	0	64.57	41.14	73.89	29.84	86.40	40.00	37.63
105	E14_Da	KnownBoundary	0	100.99	42.59	109.27	39.58	118.17	46.95	44.54
106	ER14b	ExonRegion	0	42.13	25.89	43.26	24.87	40.61	24.49	16.05
107	ER14c	ExonRegion	0	4.35	2.43	3.61	3.74	1.89	1.23	0.67
108	ER14d	ExonRegion	0	3.33	1.01	2.37	3.74	0.67	1.23	0.67
109	IG16	Intergenic	0	2.80	1.34	1.85	2.89	0.24	9.75	0.15
110	IG16_AR1	ActiveIntergenicRegion	0	1.43	1.19	1.57	3.69	0.31	11.38	0.34
111	IG16_SR2	SilentIntergenicRegion	0	0.85	1.21	1.72	1.39	0.20	12.74	0.25