Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PPOX	Gene	0	15.31	8.48	7.58	4.27	59.63	7.96	25.24
2	352210	Transcript	0	0.60	0.00	0.79	0.00	2.56	0.82	0.63
3	367999	Transcript	0	12.63	7.33	8.83	2.92	44.98	3.16	9.60
4	IG16	Intergenic	0	2.80	1.34	1.85	2.89	0.24	9.75	0.15
5	IG16_AR1	ActiveIntergenicRegion	0	1.43	1.19	1.57	3.69	0.31	11.38	0.34
6	IG16_SR2	SilentIntergenicRegion	0	0.85	1.21	1.72	1.39	0.20	12.74	0.25
7	ER1a	ExonRegion	0	0.00	0.00	1.02	0.00	1.21	0.00	0.00
8	ER1b	ExonRegion	0	9.41	7.57	5.79	4.26	38.81	10.76	9.22
9	E1_Da	KnownBoundary	0	12.00	15.32	9.67	5.63	12.70	10.80	6.94
10	E1a_E2a	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	1.56
11	ER1c	ExonRegion	0	13.04	10.28	11.54	4.35	35.43	6.31	8.78
12	E1_Db	NovelBoundary	0	3.66	1.16	0.00	1.68	1.98	8.95	0.89
13	E1b_E2a	KnownJunction	0	12.22	4.39	6.12	1.49	54.52	0.00	10.42
14	E2_Aa	NovelBoundary	0	0.00	2.94	1.18	2.71	0.00	9.70	0.76
15	ER2a	ExonRegion	0	12.53	6.21	3.27	2.52	61.53	5.20	16.42
16	E2_Da	NovelBoundary	1	2.77	0.00	0.66	2.79	3.39	8.98	0.00
17	E2a_E3a	KnownJunction	0	15.10	9.64	6.32	1.38	62.29	3.81	18.70
18	E3_Aa	NovelBoundary	1	1.03	1.63	1.49	4.88	2.17	23.42	0.00
19	ER3a	ExonRegion	0	25.16	14.00	8.96	2.94	57.34	12.82	21.25
20	E3_Da	NovelBoundary	1	9.66	3.26	1.47	5.39	6.16	19.99	1.32
21	E3a_E4a	KnownJunction	0	15.39	0.00	5.37	2.63	26.81	0.00	15.82
22	I3	Intron	1	4.28	1.32	1.01	1.39	14.50	19.71	1.51
23	I3_AR1	ActiveIntronRegion	1	4.34	1.33	1.03	1.41	14.70	19.96	1.53
24	E4_Aa	NovelBoundary	1	6.94	9.69	4.99	8.99	12.79	23.45	6.75
25	ER4a	ExonRegion	0	16.91	6.90	4.40	4.49	58.23	11.19	22.40
26	E4_Da	NovelBoundary	0	5.21	4.76	0.00	0.00	16.44	14.93	1.29
27	E4a_E5a	KnownJunction	0	13.02	6.73	5.30	0.00	56.71	0.00	21.25
28	I4_AR2	ActiveIntronRegion	1	1.75	0.66	0.78	2.15	5.21	8.43	0.38
29	E5_Aa	NovelBoundary	1	1.79	0.00	0.85	2.28	19.41	10.75	0.54
30	ER5a	ExonRegion	0	16.39	7.06	7.80	5.68	45.62	4.88	26.67
31	E5_Da	NovelBoundary	0	7.61	3.70	2.00	5.53	10.21	13.27	1.55
32	E5a_E6a	KnownJunction	1	5.17	3.89	3.84	0.00	34.16	0.00	25.22
33	I5	Intron	0	6.00	3.63	1.47	3.43	12.68	7.34	1.85
34	I5_AR2	ActiveIntronRegion	0	10.14	7.29	2.71	3.74	18.14	6.38	2.23
35	I5_AR3	ActiveIntronRegion	0	7.14	3.95	1.59	3.02	14.56	11.08	1.90
36	E6_Aa	NovelBoundary	1	8.76	1.39	0.75	2.60	14.64	18.25	5.99
37	ER6a	ExonRegion	0	20.27	6.32	7.70	4.51	71.05	16.23	33.71
38	E6_Da	NovelBoundary	1	3.32	0.00	0.00	2.79	15.84	11.23	1.55
39	E6a_E7a	KnownJunction	0	18.18	7.09	6.97	3.22	65.56	2.89	28.45
40	ER7a	ExonRegion	0	18.84	9.45	8.82	2.76	75.32	4.35	34.34
41	E7a_E8a	KnownJunction	0	16.06	12.56	7.39	4.50	72.52	5.74	39.45
42	I7	Intron	0	9.39	3.28	3.06	0.99	15.24	9.77	3.44
43	I7_AR1	ActiveIntronRegion	0	9.43	3.30	3.07	0.99	15.30	9.80	3.45
44	E8_Aa	NovelBoundary	0	8.63	8.54	1.54	2.55	19.27	20.37	3.64
45	ER8a	ExonRegion	0	14.42	8.46	10.15	4.46	96.40	4.14	34.68
46	E8_Da	NovelBoundary	0	15.89	4.47	3.84	2.63	59.57	9.54	6.92
47	E8a_E9a	KnownJunction	0	12.17	2.84	9.90	5.34	77.92	0.00	31.08
48	I8	Intron	1	4.78	0.97	2.23	1.02	11.14	10.48	2.49
49	I8_AR1	ActiveIntronRegion	1	4.82	0.98	2.25	1.04	11.25	10.55	2.52
50	ER9a	ExonRegion	0	14.69	7.52	7.83	5.03	76.02	1.98	40.28
51	E9_Da	NovelBoundary	1	1.79	0.00	3.33	3.74	4.66	9.65	0.79
52	E9a_E10a	KnownJunction	0	19.69	4.31	14.44	4.33	68.28	1.58	39.05
53	E10_Aa	NovelBoundary	1	10.78	1.23	8.52	1.68	5.39	5.15	1.55
54	ER10a	ExonRegion	0	15.73	9.95	10.80	3.67	84.58	6.06	33.94
55	E10_Da	NovelBoundary	1	7.63	1.63	3.23	1.60	4.29	11.74	1.18
56	E10a_E11a	KnownJunction	0	14.15	10.85	7.46	0.00	66.97	3.22	27.09
57	ER11a	ExonRegion	0	13.10	15.34	9.66	7.60	65.77	8.12	34.50
58	E11_Da	NovelBoundary	0	1.03	5.25	1.35	4.09	4.33	9.65	0.69
59	E11a_E12a	KnownJunction	1	15.59	16.16	8.28	6.10	72.82	0.00	32.45
60	ER12a	ExonRegion	0	14.80	11.16	7.28	1.97	56.75	2.11	26.92
61	E12_Da	NovelBoundary	0	4.67	3.05	2.37	5.53	4.61	12.73	1.73
62	E12a_E13a	KnownJunction	0	11.57	5.23	3.68	0.00	58.51	2.89	19.89
63	ER13a	ExonRegion	0	10.07	2.43	5.54	4.17	36.01	8.56	14.80
64	ER13b	ExonRegion	0	0.77	0.00	1.35	0.00	6.48	2.45	0.34
65	IG17	Intergenic	0	0.00	1.00	0.56	2.01	1.31	9.12	0.56
66	IG17_SR1	SilentIntergenicRegion	0	0.00	1.02	0.58	2.06	1.33	9.42	0.58