Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RFWD2	Gene	0	107.82	67.55	125.01	91.07	206.71	87.94	115.17
2	314478	Transcript	0	3.47	0.01	4.39	3.67	8.06	3.06	3.24
3	367665	Transcript	1	54.71	34.52	60.82	39.12	69.94	26.16	28.59
4	308769	Transcript	0	0	0	0	0	0	0	0
5	367669	Transcript	0	0	0	0	0	0	0	0
6	367667	Transcript	1	8.36	0.00	11.32	8.51	7.92	7.10	2.85
7	367666	Transcript	0	0	0	0	0	0	0	0
8	392057	Transcript	0	0.06	0.13	0.00	0.00	0.06	0.05	0.12
9	ER1a	ExonRegion	0	10.43	18.47	7.66	21.23	12.65	19.38	10.13
10	E1_Ab	KnownBoundary	0	16.07	24.17	9.96	34.73	27.27	50.68	21.78
11	ER1b	ExonRegion	0	34.38	52.61	34.32	65.26	59.83	69.07	53.05
12	E1a_E2a	KnownJunction	0	64.96	61.24	64.12	86.10	100.69	89.54	80.51
13	E2_Ab	NovelBoundary	0	69.55	53.99	73.99	84.88	124.92	92.75	83.54
14	ER2a	ExonRegion	0	69.53	62.00	74.33	87.20	116.73	90.81	84.91
15	E2a_E3a	KnownJunction	0	70.73	64.92	83.72	66.40	129.49	89.48	83.21
16	E2a_E4a	NovelJunction	0	10.20	8.20	8.55	13.98	12.98	7.69	3.58
17	E2a_E9a	NovelJunction	0	3.57	5.25	5.04	10.84	17.15	11.68	5.30
18	E2a_E12a	NovelJunction	1	0.00	1.52	0.00	1.52	1.80	13.48	0.00
19	ER2b	ExonRegion	0	75.21	65.01	83.82	81.86	129.52	96.30	90.57
20	ER3a	ExonRegion	0	105.46	82.87	130.53	98.15	186.35	99.08	126.84
21	E3a_E4a	KnownJunction	0	134.12	106.32	176.97	100.43	198.95	101.79	137.21
22	E3a_E9a	KnownJunction	1	10.56	0.00	13.82	14.52	5.30	8.07	2.32
23	ER4a	ExonRegion	0	161.15	106.46	203.14	108.39	211.38	106.68	148.35
24	E4_Da	NovelBoundary	0	68.61	37.91	86.12	46.16	94.31	47.22	69.22
25	E4a_E5a	KnownJunction	1	54.71	34.52	60.82	39.12	69.94	26.16	28.59
26	E4b_E5a	KnownJunction	0	126.94	60.53	137.04	78.59	166.99	57.70	109.00
27	ER4b	ExonRegion	0	121.61	63.48	140.50	79.29	169.26	69.58	117.27
28	ER5a	ExonRegion	0	176.09	94.75	212.11	108.32	268.90	86.01	165.63
29	E5a_E9a	KnownJunction	0	171.56	69.83	188.96	88.53	310.11	62.90	139.65
30	E5a_E10a	NovelJunction	0	5.56	1.02	6.83	9.05	7.54	1.37	3.71
31	E5a_E11a	NovelJunction	0	7.61	6.96	9.71	10.00	5.51	7.96	2.21
32	E5a_E12a	NovelJunction	0	0.00	3.68	0.63	2.71	0.00	9.25	0.00
33	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER8a	ExonRegion	0	0.17	0.40	0.00	0.00	0.18	0.14	0.37
36	ER9a	ExonRegion	0	163.98	69.97	196.91	86.49	246.21	79.73	152.55
37	E9a_E10a	KnownJunction	0	82.77	45.71	126.40	46.60	192.03	37.41	128.98
38	E9a_E11a	KnownJunction	1	40.44	18.47	41.11	28.61	34.72	42.96	13.64
39	E9a_E12a	NovelJunction	0	8.29	3.21	5.17	12.11	11.69	8.63	4.08
40	ER10a	ExonRegion	0	78.42	50.11	120.94	60.12	199.84	50.92	159.02
41	E10a_E11a	KnownJunction	0	77.64	47.66	103.60	68.92	204.43	62.98	155.27
42	ER11a	ExonRegion	0	123.25	78.11	164.36	95.63	276.58	96.66	182.59
43	E11a_E12a	KnownJunction	0	102.66	87.51	164.47	96.12	341.53	79.54	163.81
44	ER12a	ExonRegion	0	113.00	93.25	184.26	116.66	288.77	104.27	166.10
45	E12a_E13a	KnownJunction	0	4.87	0.00	4.83	3.36	0.88	1.50	2.89
46	E12a_E14a	KnownJunction	0	127.23	99.17	186.86	115.08	238.44	127.14	163.34
47	E13_Aa	NovelBoundary	0	83.67	47.92	47.62	27.28	24.67	51.08	39.38
48	ER13a	ExonRegion	0	4.72	0.02	3.96	4.59	18.39	3.63	4.78
49	E13a_E14a	KnownJunction	0	0.83	0.00	4.37	3.06	4.91	4.05	2.04
50	ER14a	ExonRegion	0	146.10	102.10	200.72	145.33	293.98	135.16	193.68
51	E14a_E15a	KnownJunction	0	128.13	99.62	141.95	144.21	287.70	124.40	147.01
52	ER15a	ExonRegion	0	191.77	110.43	251.55	165.91	361.15	125.38	179.91
53	E15a_E16a	KnownJunction	0	233.06	129.41	241.78	188.28	383.02	138.77	176.68
54	ER16a	ExonRegion	0	188.73	121.33	226.01	170.56	331.88	127.01	186.08
55	E16a_E17a	KnownJunction	0	131.03	104.85	179.07	120.15	333.48	84.50	166.76
56	E17_Aa	NovelBoundary	1	48.48	1.21	71.26	0.00	0.99	0.00	2.72
57	ER17a	ExonRegion	0	149.17	100.11	181.07	135.06	314.26	120.90	183.31
58	E17a_E18a	KnownJunction	0	122.79	91.27	179.17	139.03	348.77	125.61	182.78
59	ER18a	ExonRegion	0	110.75	95.48	158.35	131.49	312.93	127.03	188.05
60	E18a_E19a	KnownJunction	0	100.21	86.80	129.12	136.32	314.53	115.10	169.53
61	ER19a	ExonRegion	0	126.85	89.20	155.61	128.48	347.00	128.28	206.74
62	E19a_E20a	KnownJunction	0	112.29	83.99	145.03	119.58	316.75	100.42	197.62
63	ER20a	ExonRegion	0	142.99	80.41	151.21	116.33	336.97	109.52	179.53
64	E20a_E21a	KnownJunction	0	206.12	70.14	167.08	112.59	363.89	93.42	162.12
65	ER21a	ExonRegion	0	243.22	97.26	218.59	146.75	392.95	156.55	163.58
66	E21a_E22a	KnownJunction	1	301.27	101.20	237.24	180.67	397.15	183.39	165.17
67	E21b_E22b	KnownJunction	0	0.98	0.00	0.63	0.00	0.00	0.00	0.00
68	ER21b	ExonRegion	0	0.00	0.00	0.00	0.00	0.81	0.00	0.00
69	E22_Ab	NovelBoundary	1	149.01	0.00	100.28	1.03	1.18	1.45	0.73
70	ER22a	ExonRegion	0	310.76	103.26	240.74	184.05	397.48	169.92	175.12
71	ER22b	ExonRegion	0	246.72	99.91	225.15	153.56	423.98	152.75	172.93
72	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	E22a_E24a	KnownJunction	0	197.58	94.81	174.04	132.42	357.11	140.89	170.01
74	ER23a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
75	ER24a	ExonRegion	0	195.15	95.70	196.19	143.65	311.13	134.37	181.93
76	E24a_E25a	KnownJunction	0	132.22	62.05	152.93	107.44	240.76	105.40	138.11
77	ER25a	ExonRegion	0	70.39	55.19	87.18	69.54	162.36	100.29	78.58
78	ER25b	ExonRegion	0	14.60	2.43	12.19	3.12	34.42	14.71	7.42
79	ER25c	ExonRegion	0	6.15	0.00	8.81	2.49	10.53	6.13	3.37