Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	BAT2D1	Gene	0	519.77	473.45	579.87	692.94	611.08	680.19	340.52
2	367742	Transcript	0	323.04	363.13	368.00	512.59	239.41	660.98	193.33
3	345788	Transcript	0	117.22	64.24	116.71	123.22	151.01	128.75	81.82
4	392080	Transcript	0	1.99	1.82	3.27	4.36	4.45	3.27	3.37
5	338920	Transcript	0	0	0	0	0	0	0	0
6	392078	Transcript	0	6.92	12.15	13.55	12.47	5.67	28.20	3.37
7	IG14	Intergenic	0	37.68	30.48	20.14	24.44	0.58	50.49	0.13
8	IG14_SR1	SilentIntergenicRegion	0	16.91	8.56	10.19	7.45	0.15	21.04	0.00
9	IG14_AR1	ActiveIntergenicRegion	0	60.70	51.76	27.58	37.00	0.68	102.05	0.00
10	IG14_SR2	SilentIntergenicRegion	0	78.75	54.35	24.34	36.64	0.72	72.17	0.30
11	IG14_AR2	ActiveIntergenicRegion	0	10.97	4.86	6.74	3.74	0.00	12.26	0.00
12	IG14_SR3	SilentIntergenicRegion	0	9.53	7.76	4.91	6.97	0.83	9.96	0.17
13	IG14_AR3	ActiveIntergenicRegion	0	51.73	48.36	33.53	41.63	0.81	73.43	0.25
14	ER1a	ExonRegion	0	179.44	242.54	145.31	323.18	77.51	336.53	67.98
15	E1a_E2a	KnownJunction	0	358.85	252.18	320.23	497.15	100.37	459.78	127.08
16	E1a_E3a	NovelJunction	1	7.38	48.47	3.78	19.64	2.35	10.99	6.84
17	ER2a	ExonRegion	0	395.25	366.90	390.78	634.94	325.11	617.10	192.77
18	E2a_E3a	KnownJunction	0	302.47	336.12	347.76	473.31	238.99	635.40	178.70
19	E2a_E3b	KnownJunction	0	156.65	138.37	129.29	212.61	36.38	179.40	61.55
20	E3_Ab	NovelBoundary	0	173.99	182.46	199.93	227.73	90.60	297.69	83.71
21	ER3a	ExonRegion	0	343.60	390.14	388.24	551.87	239.83	686.56	207.97
22	ER3b	ExonRegion	0	538.83	527.13	488.88	752.28	402.55	674.45	253.53
23	E3a_E4a	KnownJunction	0	678.50	560.63	556.66	753.48	496.95	590.48	253.24
24	ER4a	ExonRegion	0	545.21	486.36	478.05	692.31	451.67	518.22	243.53
25	E4a_E5a	KnownJunction	0	514.03	387.92	441.93	599.74	461.06	387.95	213.25
26	ER5a	ExonRegion	0	476.50	465.68	438.51	664.35	472.97	459.60	238.00
27	E5a_E6a	KnownJunction	0	358.08	557.43	416.61	671.62	453.52	482.82	264.77
28	ER6a	ExonRegion	0	360.37	558.35	427.12	745.86	452.83	539.00	294.16
29	E6a_E7a	KnownJunction	0	271.70	558.37	374.39	794.42	414.05	638.88	288.56
30	ER7a	ExonRegion	0	280.17	474.28	388.55	705.77	364.69	507.89	279.05
31	E7a_E8a	KnownJunction	0	273.70	418.66	378.41	522.18	290.86	393.66	220.92
32	ER8a	ExonRegion	0	324.37	459.06	433.87	607.39	384.00	469.56	235.95
33	E8a_E9a	KnownJunction	0	362.56	462.09	523.97	687.27	399.44	588.15	256.53
34	ER9a	ExonRegion	0	358.90	562.69	547.88	782.62	487.12	655.27	328.43
35	E9a_E10a	KnownJunction	0	447.94	611.15	646.94	860.63	514.93	712.66	368.66
36	ER10a	ExonRegion	0	440.94	687.66	668.33	848.13	487.02	754.52	390.31
37	E10a_E11a	KnownJunction	0	354.28	582.52	532.44	703.75	593.13	662.01	424.12
38	ER11a	ExonRegion	0	364.17	588.33	500.79	733.12	550.49	663.17	417.41
39	E11a_E12a	KnownJunction	0	282.44	457.15	385.17	627.78	468.41	509.81	275.81
40	ER12a	ExonRegion	0	761.12	518.33	711.56	710.00	514.42	695.13	284.05
41	E12a_E13a	KnownJunction	1	799.65	368.80	797.14	576.31	631.14	558.96	255.73
42	ER13a	ExonRegion	0	509.27	417.42	578.74	619.51	512.67	527.53	238.78
43	E13a_E14a	KnownJunction	0	318.31	427.78	431.56	678.06	437.96	498.26	271.85
44	ER14a	ExonRegion	0	247.97	466.60	386.43	654.22	469.76	480.77	272.66
45	E14a_E15a	KnownJunction	0	225.53	475.57	360.32	653.14	475.49	524.74	297.32
46	ER15a	ExonRegion	0	248.52	527.21	379.11	645.38	430.79	493.48	270.23
47	E15a_E16a	KnownJunction	0	240.18	466.29	363.17	607.22	449.44	488.99	263.88
48	ER16a	ExonRegion	0	594.41	480.69	599.01	651.09	498.04	567.33	267.00
49	E16a_E17a	KnownJunction	0	435.19	707.70	579.21	800.35	416.20	933.54	258.07
50	E16a_E18a	NovelJunction	1	20.11	16.55	67.76	49.52	0.00	41.54	0.64
51	ER17a	ExonRegion	0	446.43	621.53	601.16	725.66	432.85	807.82	317.98
52	E17a_E18a	KnownJunction	0	383.99	681.77	695.62	814.11	513.20	871.77	381.20
53	ER18a	ExonRegion	0	590.26	744.40	958.25	874.34	792.52	1003.54	481.24
54	E18a_E19a	KnownJunction	0	812.53	872.92	1227.51	1119.95	1031.59	1259.56	695.29
55	ER19a	ExonRegion	0	500.63	752.09	618.90	931.45	781.46	961.74	482.52
56	E19a_E20a	KnownJunction	0	530.22	369.88	560.13	815.33	654.79	672.30	331.64
57	ER20a	ExonRegion	0	491.89	407.13	540.87	808.60	640.40	651.35	343.13
58	E20a_E21a	KnownJunction	0	457.14	413.75	490.92	782.69	522.17	606.05	307.42
59	ER21a	ExonRegion	0	511.99	389.85	553.72	706.08	538.65	669.15	329.86
60	E21a_E22a	KnownJunction	0	454.93	379.91	461.98	552.98	469.54	492.93	279.02
61	ER22a	ExonRegion	0	461.18	464.84	553.53	750.74	669.11	703.69	434.43
62	E22a_E23a	KnownJunction	0	420.37	565.28	502.72	882.93	753.44	686.72	514.07
63	E22a_E24a	NovelJunction	1	10.38	22.28	11.50	23.70	0.00	51.43	5.30
64	E22a_E25a	KnownJunction	1	28.56	16.58	29.90	40.45	4.40	71.96	1.69
65	ER23a	ExonRegion	0	444.49	520.35	568.66	793.70	853.94	679.91	504.52
66	E23a_E24a	KnownJunction	0	457.19	433.85	512.86	686.54	1259.86	628.29	477.15
67	E23a_E25a	NovelJunction	1	55.23	30.61	54.29	105.57	21.16	61.75	3.21
68	ER24a	ExonRegion	0	463.45	445.50	454.27	732.24	854.55	684.62	448.14
69	E24a_E25a	KnownJunction	0	538.62	488.68	526.40	733.03	1134.82	733.19	490.12
70	ER25a	ExonRegion	0	799.44	591.11	766.12	948.06	1117.04	1081.60	572.07
71	E25a_E26a	KnownJunction	0	972.84	572.09	923.35	952.50	1344.76	1129.50	626.60
72	ER26a	ExonRegion	0	636.94	594.59	783.07	1009.32	1119.23	1167.94	604.47
73	E26a_E27a	KnownJunction	0	596.72	626.55	831.12	1073.95	1145.77	1311.21	666.74
74	ER27a	ExonRegion	0	604.43	604.71	785.64	1043.85	1063.69	1158.33	613.19
75	E27a_E28a	KnownJunction	0	691.28	558.19	777.79	1040.00	1194.34	1138.83	536.02
76	ER28a	ExonRegion	0	701.99	599.77	832.55	1018.06	1047.40	1150.25	575.88
77	E28a_E29a	KnownJunction	0	489.72	674.41	672.89	1004.97	875.09	1197.39	553.75
78	ER29a	ExonRegion	0	538.19	574.07	753.36	939.90	931.81	1107.47	576.39
79	E29a_E30a	KnownJunction	0	590.26	490.17	897.64	900.45	921.26	980.52	584.98
80	ER30a	ExonRegion	0	565.41	451.81	816.84	796.20	669.33	944.53	536.25
81	E30_Da	NovelBoundary	0	156.22	186.74	209.53	265.79	109.27	290.83	140.91
82	E30a_E31a	KnownJunction	0	295.95	340.69	467.52	531.50	597.67	607.95	360.74
83	ER31a	ExonRegion	0	951.55	519.79	1092.39	1004.88	1219.91	1041.07	654.11
84	E31a_E32a	KnownJunction	0	1008.46	524.12	1079.43	978.91	1186.00	974.20	644.58
85	E31a_E34b	NovelJunction	1	58.40	69.49	68.09	172.35	70.84	170.23	5.39
86	ER32a	ExonRegion	0	1004.43	480.23	1053.84	931.90	1199.50	991.74	757.67
87	E32a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
88	E32a_E34a	KnownJunction	0	26.87	0.00	10.99	4.39	23.86	1.66	1.58
89	E32a_E34b	KnownJunction	0	513.83	324.40	553.26	589.58	786.31	598.47	432.48
90	E33a_E34b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
91	ER33a	ExonRegion	0	5.96	5.47	9.82	13.09	13.36	9.81	10.12
92	ER34a	ExonRegion	0	296.23	176.15	309.23	324.83	424.77	312.63	242.18
93	ER34b	ExonRegion	0	496.06	313.40	642.58	666.71	970.78	644.74	429.38
94	E34a_E35a	KnownJunction	1	290.86	101.46	473.89	389.00	510.80	422.31	113.19
95	ER35a	ExonRegion	0	419.98	244.09	455.57	442.74	573.49	521.18	255.59
96	ER35b	ExonRegion	0	6.92	12.15	13.55	12.47	5.67	28.20	3.37