Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RALGPS2	Gene	0	44.98	42.50	15.56	7.56	80.74	7.59	66.81
2	367635	Transcript	0	0	0	0	0	0	0	0
3	367634	Transcript	0	11.37	6.70	11.01	8.13	16.41	1.23	6.71
4	367633	Transcript	0	5.06	3.39	3.98	2.12	12.27	1.97	4.71
5	324778	Transcript	0	21.20	15.74	8.74	3.08	36.79	4.09	32.10
6	367632	Transcript	0	2.92	3.20	0.66	0.12	2.70	0.03	3.10
7	ER1a	ExonRegion	0	0.00	0.00	0.41	0.00	2.00	0.00	0.00
8	E1_Ab	KnownBoundary	0	0.00	1.52	0.79	0.00	6.20	0.00	0.00
9	ER1b	ExonRegion	0	0.27	0.10	0.58	0.00	3.05	0.00	1.80
10	E1_Ac	KnownBoundary	0	0.72	1.44	0.69	0.00	4.84	1.47	6.62
11	ER1c	ExonRegion	1	3.62	16.03	1.53	2.96	17.55	2.98	20.44
12	E1a_E2a	KnownJunction	0	11.98	37.15	7.04	6.07	21.55	5.41	21.98
13	I1_SR1	SilentIntronRegion	0	13.62	6.64	3.84	1.80	3.37	1.18	1.71
14	I1_AR2	ActiveIntronRegion	0	13.03	5.21	3.04	0.33	2.52	1.05	2.78
15	ER2a	ExonRegion	0	31.66	71.17	9.72	9.74	64.83	13.18	65.02
16	E2a_E3a	KnownJunction	0	41.36	79.26	15.74	6.42	80.62	7.48	87.36
17	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER3a	ExonRegion	0	43.79	73.70	12.74	11.59	58.43	14.79	86.62
19	E3a_E4a	KnownJunction	0	47.38	55.56	10.99	13.03	75.11	11.77	78.69
20	ER4a	ExonRegion	0	56.55	74.46	19.50	12.62	87.35	12.16	90.98
21	E4a_E5a	KnownJunction	0	50.09	78.66	24.95	9.48	106.43	5.68	84.91
22	ER5a	ExonRegion	0	74.26	68.25	27.43	10.72	118.86	11.15	96.40
23	E5a_E6a	KnownJunction	0	102.76	66.89	35.84	12.98	109.64	17.53	101.38
24	ER6a	ExonRegion	0	90.23	79.82	30.77	9.03	95.06	13.02	92.01
25	E6a_E7a	KnownJunction	0	82.85	70.64	25.44	10.57	112.22	11.26	86.45
26	E6a_E8a	NovelJunction	1	18.51	7.15	2.69	6.20	6.04	1.98	5.20
27	ER7a	ExonRegion	0	86.74	67.50	30.27	13.46	147.43	10.72	110.34
28	E7a_E8a	KnownJunction	0	72.10	51.44	19.62	9.27	101.52	10.51	78.42
29	E7a_E9a	NovelJunction	0	8.43	9.51	2.34	0.00	7.12	1.39	6.21
30	ER8a	ExonRegion	0	77.76	50.07	25.28	11.01	112.58	6.79	94.84
31	E8a_E9a	KnownJunction	0	62.14	54.04	21.47	7.31	142.56	5.71	102.05
32	ER9a	ExonRegion	0	61.34	58.92	22.28	9.79	123.67	7.34	102.25
33	E9a_E10a	KnownJunction	0	74.74	60.82	20.26	8.15	161.21	7.77	100.31
34	ER10a	ExonRegion	0	64.34	60.28	22.63	12.22	132.74	9.63	107.55
35	E10_Da	KnownBoundary	0	3.30	6.20	2.67	0.00	1.80	0.00	6.75
36	E10a_E11a	KnownJunction	0	54.81	62.03	20.08	11.16	129.03	16.19	101.38
37	ER10b	ExonRegion	0	5.06	3.39	3.98	2.12	12.27	1.97	4.71
38	E10_Db	NovelBoundary	0	72.72	59.01	57.90	56.35	46.41	50.01	34.14
39	ER11a	ExonRegion	0	61.93	67.76	23.79	10.97	119.49	15.18	106.84
40	E11a_E12a	KnownJunction	0	69.48	65.28	18.83	10.10	100.99	12.62	107.44
41	ER12a	ExonRegion	0	47.86	73.61	14.31	13.05	109.28	8.10	91.45
42	E12_Da	NovelBoundary	1	14.87	10.40	5.37	1.68	3.32	5.57	3.25
43	E12a_E13a	KnownJunction	0	47.57	64.23	16.50	9.97	105.26	11.74	98.96
44	I12	Intron	0	13.33	7.38	2.54	1.01	3.74	0.86	5.47
45	I12_AR1	ActiveIntronRegion	0	13.90	8.99	2.64	1.28	3.66	1.29	6.37
46	ER13a	ExonRegion	0	45.83	82.39	16.06	10.87	129.06	6.98	98.03
47	E13a_E14a	KnownJunction	0	49.02	86.04	27.29	5.82	131.54	8.31	70.80
48	ER14a	ExonRegion	0	64.86	81.66	23.15	11.54	131.51	6.87	86.45
49	E14a_E15a	KnownJunction	1	56.16	54.46	5.73	4.69	104.68	5.90	73.36
50	E14a_E16b	KnownJunction	0	11.37	6.70	11.01	8.13	16.41	1.23	6.71
51	ER15a	ExonRegion	1	68.71	63.27	7.50	4.28	122.97	3.84	88.38
52	E15a_E16b	KnownJunction	1	70.21	55.17	5.26	1.68	104.94	1.47	83.91
53	ER16a	ExonRegion	0	2.92	3.20	0.66	0.12	2.70	0.03	3.10
54	E16_Ab	KnownBoundary	0	3.94	3.23	0.73	0.00	0.00	0.00	5.59
55	ER16b	ExonRegion	0	95.68	74.79	23.97	13.46	162.40	8.76	109.87
56	E16a_E17a	KnownJunction	0	98.32	66.52	24.63	21.56	222.92	8.63	133.44
57	ER17a	ExonRegion	0	78.36	71.15	16.96	15.47	174.78	7.88	118.48
58	E17a_E18a	KnownJunction	0	61.74	73.40	12.73	14.30	111.41	10.05	102.24
59	ER18a	ExonRegion	0	65.30	80.39	19.24	15.74	139.80	9.21	121.95
60	E18a_E19a	KnownJunction	0	55.74	48.68	11.47	12.11	115.59	4.02	98.87
61	E18a_E20a	NovelJunction	0	8.41	8.38	2.23	0.00	8.71	3.32	4.86
62	ER19a	ExonRegion	0	52.42	63.34	13.13	11.29	131.41	6.93	117.41
63	E19a_E20a	KnownJunction	0	62.37	59.29	14.87	8.99	111.02	8.36	97.54
64	ER20a	ExonRegion	0	68.41	68.08	22.50	11.14	128.84	7.49	100.85
65	E20_Da	KnownBoundary	0	70.08	68.20	28.94	12.38	148.37	7.05	93.35
66	ER20b	ExonRegion	0	91.39	63.33	28.50	10.75	131.01	15.35	107.17
67	E20_Db	KnownBoundary	0	95.23	45.63	34.43	7.91	154.36	9.30	104.73
68	ER20c	ExonRegion	0	42.40	31.47	17.48	6.15	73.59	8.17	64.21
69	IG33_AR1	ActiveIntergenicRegion	0	42.58	31.93	15.09	5.51	119.43	9.48	70.48