Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C1orf9	Gene	0	143.54	155.22	203.14	214.88	153.90	233.57	132.73
2	392073	Transcript	0	0.92	1.13	1.34	1.98	0.26	1.05	0.41
3	367723	Transcript	0	26.85	21.34	21.51	25.50	13.51	22.92	8.48
4	263688	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	1.84	2.26	2.68	3.95	0.51	2.10	0.82
6	E1_Ab	KnownBoundary	0	4.39	4.33	2.97	5.93	1.18	6.16	0.00
7	ER1b	ExonRegion	0	3.12	6.51	2.61	5.13	0.56	4.65	2.35
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	1.80	16.98	2.21	20.96	0.26	16.81	1.42
12	E2_Ab	KnownBoundary	0	4.74	49.44	7.65	62.69	0.00	51.91	10.43
13	ER2b	ExonRegion	0	22.28	91.13	24.71	97.48	18.04	98.94	28.05
14	E2a_E3a	KnownJunction	0	47.10	165.35	80.19	196.17	38.68	186.58	60.46
15	E2a_E5a	NovelJunction	1	4.26	2.36	3.18	10.48	0.00	30.47	0.00
16	ER3a	ExonRegion	0	116.28	194.37	147.12	269.95	76.51	244.86	91.77
17	E3a_E4a	KnownJunction	0	108.53	133.14	167.44	273.95	121.97	241.76	96.16
18	E3a_E5a	KnownJunction	1	51.84	57.95	32.85	72.04	13.51	55.64	16.87
19	ER4a	ExonRegion	0	140.21	181.67	235.85	282.30	128.48	243.95	111.88
20	E4a_E5a	KnownJunction	0	112.69	180.98	175.12	245.50	112.06	225.79	103.82
21	ER5a	ExonRegion	0	162.39	211.10	233.06	278.99	149.69	247.64	134.26
22	E5a_E6a	KnownJunction	0	102.13	184.95	181.58	277.52	82.02	205.47	124.22
23	E5a_E7a	NovelJunction	0	7.28	6.75	7.47	18.67	1.06	13.64	2.97
24	ER6a	ExonRegion	0	116.28	205.34	205.77	274.92	119.94	223.99	142.49
25	E6a_E7a	KnownJunction	0	106.21	185.24	186.20	266.96	107.15	186.96	134.29
26	E7_Aa	NovelBoundary	1	42.08	1.52	73.82	1.60	2.14	1.02	3.11
27	ER7a	ExonRegion	0	173.11	192.98	241.87	250.99	125.92	190.28	132.13
28	E7a_E8a	KnownJunction	0	205.17	189.34	266.77	245.63	147.88	211.83	128.98
29	ER8a	ExonRegion	0	229.02	196.29	286.27	245.95	148.53	196.74	137.28
30	E8a_E9a	KnownJunction	0	232.17	200.11	284.83	211.20	176.86	161.60	140.48
31	ER9a	ExonRegion	0	221.97	209.56	307.57	262.66	163.18	212.46	142.72
32	E9a_E10a	KnownJunction	0	195.56	177.73	266.25	271.18	156.74	200.46	146.68
33	ER10a	ExonRegion	0	185.31	134.90	284.48	217.80	177.16	178.85	151.75
34	E10a_E11a	KnownJunction	0	177.88	102.51	281.93	155.53	201.46	133.81	147.69
35	I10_AR1	ActiveIntronRegion	1	24.76	15.71	43.82	18.71	6.32	10.77	5.23
36	ER11a	ExonRegion	0	194.36	129.99	309.87	211.34	193.77	180.70	149.55
37	E11a_E12a	KnownJunction	0	166.15	158.71	277.03	245.63	186.80	184.17	151.93
38	ER12a	ExonRegion	0	178.02	184.35	289.84	249.31	191.30	200.12	157.86
39	E12a_E13a	KnownJunction	0	73.62	117.72	135.20	150.22	119.99	127.73	72.45
40	E12a_E14a	KnownJunction	1	55.56	27.40	53.17	29.96	40.55	36.05	17.04
41	E13a_E14a	KnownJunction	0	57.83	117.49	113.11	163.52	118.68	118.29	106.63
42	ER13a	ExonRegion	0	97.15	176.56	190.05	229.44	150.56	178.35	135.69
43	ER14a	ExonRegion	0	146.17	188.26	231.48	228.33	162.90	188.96	145.93
44	E14a_E15a	KnownJunction	0	133.57	161.46	199.68	186.58	147.38	159.43	112.23
45	ER15a	ExonRegion	0	166.83	194.98	263.63	239.42	202.02	205.15	161.21
46	E15a_E16a	KnownJunction	0	204.47	153.85	267.86	256.34	211.63	193.01	166.23
47	ER16a	ExonRegion	0	205.00	170.28	239.01	202.08	202.41	178.22	148.25
48	E16a_E17a	KnownJunction	0	165.50	154.55	196.40	163.77	186.15	138.88	150.31
49	E16a_E18a	NovelJunction	1	15.09	0.00	6.14	6.18	1.18	15.25	0.00
50	E16a_E19a	NovelJunction	1	26.95	30.90	57.42	81.52	6.82	58.16	2.45
51	ER17a	ExonRegion	0	148.39	156.17	193.84	167.13	187.16	148.31	181.18
52	E17a_E18a	KnownJunction	0	151.58	137.66	205.98	164.90	232.03	162.00	168.62
53	ER18a	ExonRegion	0	168.02	175.47	202.13	189.70	204.83	164.05	195.80
54	E18a_E19a	KnownJunction	0	161.98	197.59	135.67	200.26	178.82	184.38	170.23
55	ER19a	ExonRegion	0	172.72	190.04	255.44	250.98	194.51	255.09	178.98
56	E19a_E20a	KnownJunction	0	140.11	135.09	187.89	194.49	187.60	236.53	160.73
57	ER20a	ExonRegion	0	123.79	170.16	190.31	253.02	194.22	255.26	164.50
58	E20a_E21a	KnownJunction	0	101.49	165.48	162.38	209.22	160.33	240.72	169.94
59	E20a_E22a	NovelJunction	0	4.12	2.81	9.99	13.90	0.00	6.49	0.82
60	ER21a	ExonRegion	0	116.35	146.89	166.49	206.56	183.79	221.82	156.27
61	E21a_E22a	KnownJunction	0	134.12	132.99	205.58	165.82	218.20	203.01	136.91
62	ER22a	ExonRegion	0	200.20	184.53	279.94	272.91	237.07	295.24	191.62
63	E22a_E23a	KnownJunction	0	218.29	195.98	315.73	255.55	178.36	354.64	173.65
64	ER23a	ExonRegion	0	189.61	180.56	267.15	245.56	232.22	329.62	187.02
65	E23a_E24a	KnownJunction	0	141.31	124.29	175.52	195.57	193.81	257.14	130.73
66	ER24a	ExonRegion	0	133.67	115.15	186.79	168.23	133.12	263.76	120.56
67	E24a_E25a	KnownJunction	0	119.32	102.67	174.23	147.57	99.91	252.83	113.81
68	ER25a	ExonRegion	0	154.04	153.91	208.08	232.01	172.13	308.12	135.56
69	IG28_SR1	SilentIntergenicRegion	0	3.05	5.98	4.33	5.76	1.89	9.92	3.13