Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RAG1AP1	Gene	0	91.85	89.47	45.89	65.03	122.75	111.94	202.54
2	368405	Transcript	0	13.61	21.23	6.54	13.31	1.31	47.82	14.34
3	368404	Transcript	0	99.04	47.18	41.39	37.24	53.64	35.88	247.52
4	303343	Transcript	0	7.21	17.65	3.84	12.98	14.34	25.67	7.35
5	368401	Transcript	0	0	0	0	0	0	0	0
6	303332	Transcript	1	11.40	38.07	14.00	32.81	0.00	83.43	97.15
7	ER1a	ExonRegion	0	22.60	32.13	10.76	24.07	1.45	76.85	18.95
8	E1a_E3a	KnownJunction	1	4.62	10.32	2.31	2.55	1.18	18.79	9.73
9	E2_Ab	NovelBoundary	0	6.66	5.12	5.06	4.93	52.15	8.79	27.16
10	ER2a	ExonRegion	0	0.26	1.48	0.00	2.63	2.16	2.72	0.67
11	ER2b	ExonRegion	0	3.80	29.07	0.21	24.57	21.36	20.25	5.47
12	E2_Ac	KnownBoundary	1	17.09	75.08	6.51	61.36	22.71	50.01	57.61
13	ER2c	ExonRegion	1	7.49	53.01	3.06	39.43	22.24	25.45	46.07
14	E2a_E3a	KnownJunction	1	8.28	41.46	4.67	13.41	23.44	20.88	63.46
15	ER3a	ExonRegion	1	31.22	77.62	22.69	48.66	128.94	107.30	169.13
16	E3_Da	KnownBoundary	1	62.27	102.91	43.74	83.33	187.79	182.05	272.86
17	E3a_E3b	KnownJunction	1	11.40	38.07	14.00	32.81	0.00	83.43	97.15
18	ER3b	ExonRegion	0	63.78	93.54	39.74	80.84	171.55	159.38	279.62
19	E3b_E4a	KnownJunction	0	64.14	59.22	26.79	58.60	58.00	90.02	237.10
20	E3b_E5a	KnownJunction	0	44.38	35.18	23.94	26.20	49.89	57.83	131.89
21	E3b_E6a	NovelJunction	1	2.69	17.23	3.22	11.68	24.11	26.48	18.30
22	ER3c	ExonRegion	0	86.30	106.44	46.37	91.70	128.14	172.68	353.07
23	ER4a	ExonRegion	0	130.70	99.18	57.48	66.82	193.33	96.32	370.51
24	E4a_E5a	KnownJunction	0	197.83	92.87	82.79	71.85	105.12	69.04	494.36
25	E4a_E6a	KnownJunction	0	7.21	17.65	3.84	12.98	14.34	25.67	7.35
26	ER5a	ExonRegion	0	169.80	153.54	76.96	89.17	171.80	126.62	464.20
27	E5a_E6a	KnownJunction	0	255.09	142.02	122.90	94.01	398.31	125.42	740.85
28	ER6a	ExonRegion	0	147.62	158.65	85.05	112.31	262.45	179.61	422.89
29	E6a_E7a	KnownJunction	0	75.92	146.38	46.72	84.55	193.28	165.68	257.81
30	ER7a	ExonRegion	0	141.81	141.36	73.92	96.90	249.90	196.66	349.15
31	E7_Da	KnownBoundary	0	162.31	140.21	94.66	102.21	230.90	224.02	353.91
32	ER7b	ExonRegion	0	94.49	113.11	63.66	95.51	145.93	158.79	230.83
33	E7_Db	KnownBoundary	0	62.94	105.66	42.81	85.99	87.05	99.70	168.77
34	ER7c	ExonRegion	0	110.93	87.63	53.40	70.87	135.61	115.37	154.44
35	IG45	Intergenic	0	2.84	1.68	2.19	1.30	0.94	8.05	0.81
36	IG45_AR1	ActiveIntergenicRegion	0	1.21	2.03	1.75	2.10	0.73	10.29	0.91