Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	THBS3	Gene	0	57.57	17.91	21.40	11.76	17.11	33.71	87.90
2	368378	Transcript	0	55.24	17.44	21.00	10.52	12.00	29.15	91.49
3	IG2	Intergenic	0	68.58	10.72	35.57	19.51	0.44	13.50	27.32
4	IG2_AR3	ActiveIntergenicRegion	0	54.70	9.80	29.09	22.76	0.20	19.51	23.90
5	IG2_SR2	SilentIntergenicRegion	0	111.43	17.29	55.93	24.32	1.10	14.99	39.43
6	IG2_AR2	ActiveIntergenicRegion	0	58.42	6.34	32.35	13.40	0.01	3.54	27.89
7	ER1a	ExonRegion	1	12.71	2.27	5.34	4.78	5.61	23.43	10.71
8	E1_Da	NovelBoundary	0	19.44	6.04	12.50	1.68	0.00	0.00	23.62
9	E1a_E2a	KnownJunction	1	3.72	4.49	2.95	4.88	0.00	22.70	6.82
10	I1	Intron	0	21.21	4.19	10.00	2.43	1.92	4.50	16.40
11	I1_SR1	SilentIntronRegion	0	21.82	3.89	12.65	4.59	0.44	2.00	17.93
12	I1_AR1	ActiveIntronRegion	0	24.45	4.67	10.63	2.41	1.81	5.44	20.13
13	I1_AR2	ActiveIntronRegion	0	24.86	3.80	11.57	2.06	0.81	9.01	17.83
14	I1_SR2	SilentIntronRegion	1	17.13	5.26	11.25	1.93	3.38	6.63	11.65
15	E2_Aa	NovelBoundary	1	16.07	0.00	4.68	5.31	0.95	14.28	21.68
16	ER2a	ExonRegion	0	35.39	15.37	12.53	12.69	4.03	32.69	45.29
17	E2_Da	NovelBoundary	0	12.45	7.30	9.13	2.65	5.88	1.29	14.78
18	E2a_E3a	KnownJunction	0	34.06	12.58	10.39	8.56	3.64	18.79	42.12
19	E3_Aa	NovelBoundary	0	18.96	4.65	3.35	3.22	20.08	9.81	14.56
20	ER3a	ExonRegion	0	53.71	15.31	18.90	12.44	17.46	37.42	63.11
21	E3_Da	NovelBoundary	1	5.06	2.44	0.73	2.82	30.13	20.85	2.59
22	E3a_E4a	KnownJunction	0	55.03	16.16	31.84	11.13	6.36	19.75	68.92
23	I3	Intron	0	2.65	0.91	0.48	0.93	8.01	1.78	0.50
24	I3_AR1	ActiveIntronRegion	0	2.70	0.92	0.48	0.95	8.14	1.79	0.51
25	ER4a	ExonRegion	0	55.77	10.24	26.40	7.69	9.58	28.29	74.48
26	E4_Da	NovelBoundary	0	13.17	0.00	8.87	3.20	22.61	5.39	11.72
27	E4a_E5a	KnownJunction	1	33.43	0.00	12.46	3.36	5.33	12.73	73.28
28	I4_AR1	ActiveIntronRegion	0	14.44	3.99	7.70	2.25	10.21	2.58	6.65
29	E5a_E6a	KnownJunction	0	49.24	22.88	13.72	8.48	7.95	21.90	63.23
30	ER5a	ExonRegion	0	54.87	11.88	15.93	7.99	8.37	23.48	80.98
31	ER6a	ExonRegion	0	52.65	22.44	24.46	8.32	13.12	26.62	81.98
32	E6_Da	NovelBoundary	0	6.13	2.92	3.99	1.35	14.52	9.30	1.46
33	E6a_E7a	KnownJunction	0	51.79	13.24	24.37	8.86	7.61	14.07	75.77
34	E7_Aa	NovelBoundary	1	22.63	7.41	7.24	0.00	22.82	14.18	0.66
35	ER7a	ExonRegion	0	56.55	21.70	17.89	8.08	10.23	21.48	87.80
36	E7_Da	NovelBoundary	0	2.45	0.00	0.86	0.00	10.79	6.51	1.78
37	E7a_E8a	KnownJunction	1	50.22	21.28	14.28	4.82	6.06	23.88	88.65
38	ER8a	ExonRegion	0	56.25	18.79	17.44	8.36	14.53	21.76	88.64
39	E8_Da	NovelBoundary	0	0.92	0.00	2.00	0.00	9.34	2.55	0.00
40	E8a_E9a	KnownJunction	0	65.01	15.87	19.57	13.57	4.38	22.75	104.06
41	I8	Intron	0	3.89	2.92	0.58	1.61	9.83	4.31	0.75
42	I8_AR1	ActiveIntronRegion	0	4.40	3.17	0.62	0.86	12.06	5.01	0.75
43	E9_Aa	NovelBoundary	1	3.27	1.10	0.00	0.00	10.79	9.14	0.00
44	ER9a	ExonRegion	0	64.32	14.02	17.53	10.87	15.82	23.82	90.52
45	E9_Da	NovelBoundary	0	8.33	1.34	1.62	2.36	20.01	10.10	0.72
46	E9a_E10a	KnownJunction	0	40.69	11.74	12.46	9.27	4.36	12.25	73.29
47	I9	Intron	0	5.57	4.06	1.90	2.09	11.98	6.16	3.60
48	I9_AR1	ActiveIntronRegion	0	5.61	4.09	1.92	2.10	12.06	6.22	3.62
49	E10_Aa	NovelBoundary	0	27.82	16.03	5.25	6.94	15.54	13.19	24.46
50	ER10a	ExonRegion	0	58.36	16.62	20.20	7.82	11.99	23.42	95.77
51	E10_Da	NovelBoundary	0	5.69	4.15	1.58	1.11	18.97	3.22	1.68
52	E10a_E11a	KnownJunction	1	57.61	25.90	21.96	6.39	8.11	29.27	99.99
53	I10_AR2	ActiveIntronRegion	0	6.18	0.34	1.97	3.37	7.72	1.18	0.51
54	E11_Aa	NovelBoundary	0	1.03	0.00	0.00	2.95	14.06	1.66	0.00
55	ER11a	ExonRegion	0	43.64	18.57	17.34	9.66	9.25	23.42	67.14
56	E11a_E12a	KnownJunction	0	64.59	26.90	25.16	10.24	5.03	26.59	117.93
57	I11	Intron	0	3.67	0.42	0.73	2.24	8.70	0.00	0.96
58	I11_SR1	SilentIntronRegion	0	3.71	0.42	0.74	2.26	8.77	0.00	0.97
59	ER12a	ExonRegion	0	70.54	19.77	34.18	12.39	15.56	30.38	148.88
60	E12_Da	NovelBoundary	0	3.37	0.00	0.00	2.98	22.66	0.00	2.65
61	E12a_E13a	KnownJunction	0	66.23	14.24	37.43	13.38	6.41	26.93	119.34
62	I12	Intron	0	2.17	0.00	0.00	2.07	18.92	2.07	0.55
63	I12_SR1	SilentIntronRegion	0	2.21	0.00	0.00	2.12	19.30	2.11	0.55
64	E13_Aa	NovelBoundary	0	1.50	2.73	1.31	1.38	14.11	6.57	0.60
65	ER13a	ExonRegion	0	78.41	21.00	35.16	17.25	26.78	38.02	161.81
66	E13_Da	NovelBoundary	0	8.31	0.00	2.72	5.45	20.26	2.73	1.49
67	E13a_E14a	KnownJunction	0	65.89	20.91	29.53	13.11	18.77	34.28	185.63
68	I13	Intron	1	3.95	1.61	1.31	2.63	20.02	13.66	0.54
69	I13_SR1	SilentIntronRegion	0	2.58	0.72	1.16	1.17	13.79	5.37	0.00
70	I13_AR1	ActiveIntronRegion	1	6.47	1.84	1.51	4.24	33.50	23.91	0.72
71	ER14a	ExonRegion	0	73.99	19.03	35.59	19.42	16.99	38.09	135.60
72	E14_Da	NovelBoundary	0	9.86	5.81	2.31	1.06	9.57	4.96	1.52
73	E14a_E15a	KnownJunction	0	65.98	16.52	25.35	12.79	11.80	33.55	115.94
74	I14	Intron	1	10.90	4.65	4.73	3.64	26.45	24.57	4.86
75	I14_AR1	ActiveIntronRegion	1	10.96	4.68	4.76	3.66	26.61	24.71	4.89
76	E15_Aa	NovelBoundary	0	11.07	9.67	9.14	10.27	16.44	7.42	3.74
77	ER15a	ExonRegion	0	69.76	24.17	26.50	19.49	21.46	33.62	127.47
78	E15_Da	NovelBoundary	0	8.19	5.88	5.71	2.38	12.63	5.57	3.78
79	E15a_E16a	KnownJunction	0	49.37	24.96	21.02	14.63	9.96	34.57	102.10
80	I15	Intron	0	1.23	1.34	0.00	0.69	10.95	4.05	0.00
81	I15_AR1	ActiveIntronRegion	0	0.29	0.71	0.00	0.70	13.13	1.66	0.00
82	I15_SR1	SilentIntronRegion	0	1.75	1.71	0.00	0.69	9.96	5.45	0.00
83	ER16a	ExonRegion	0	57.17	27.85	24.33	11.20	15.13	34.17	119.67
84	E16_Da	NovelBoundary	0	4.69	1.63	3.48	0.00	29.81	6.00	0.69
85	E16a_E17a	KnownJunction	0	61.15	20.31	25.38	8.89	11.41	20.74	111.66
86	E17_Aa	NovelBoundary	1	11.18	11.48	4.07	8.21	20.56	48.48	7.50
87	ER17a	ExonRegion	1	76.91	31.33	27.59	13.65	47.77	79.85	125.18
88	E17_Da	NovelBoundary	1	7.81	4.36	0.00	8.29	25.15	51.24	3.53
89	E17a_E18a	KnownJunction	0	56.58	15.11	25.16	9.78	7.38	36.66	114.79
90	I17	Intron	0	5.47	1.46	1.82	0.50	19.17	3.44	0.55
91	I17_AR1	ActiveIntronRegion	0	5.53	1.48	1.84	0.51	19.35	3.47	0.55
92	E18_Aa	NovelBoundary	1	5.51	5.88	0.55	1.49	16.67	19.00	12.04
93	ER18a	ExonRegion	0	80.02	26.16	26.39	13.31	27.66	35.59	130.42
94	E18_Da	NovelBoundary	0	4.44	1.08	3.69	1.33	16.92	9.78	0.89
95	E18a_E19a	KnownJunction	0	55.48	25.40	20.91	13.00	4.22	33.53	111.84
96	I18	Intron	0	2.41	1.60	0.46	1.68	17.03	4.95	0.91
97	I18_AR1	ActiveIntronRegion	0	2.44	1.62	0.46	1.71	17.30	5.04	0.92
98	E19_Aa	NovelBoundary	1	25.62	6.12	12.10	1.06	29.09	15.76	0.00
99	ER19a	ExonRegion	0	66.82	30.22	22.73	11.48	13.52	30.25	122.38
100	E19_Da	NovelBoundary	0	10.05	5.25	7.01	2.55	16.16	3.89	1.78
101	E19a_E20a	KnownJunction	0	58.98	21.73	19.01	11.38	6.39	26.69	107.34
102	I19	Intron	0	3.96	3.36	1.63	3.40	14.23	3.81	1.86
103	I19_AR1	ActiveIntronRegion	0	4.00	3.39	1.65	3.43	14.35	3.84	1.88
104	ER20a	ExonRegion	0	63.20	17.73	21.26	14.91	18.22	40.84	104.33
105	E20_Da	NovelBoundary	0	18.96	4.83	9.20	1.68	11.69	11.18	11.34
106	E20a_E21a	KnownJunction	0	45.83	8.30	16.44	9.08	5.56	26.13	67.16
107	I20	Intron	0	17.09	3.71	6.73	1.14	9.39	5.54	7.17
108	I20_AR1	ActiveIntronRegion	0	17.22	3.74	6.78	1.15	9.46	5.56	7.23
109	E21_Aa	NovelBoundary	0	24.73	13.24	6.65	5.85	17.24	26.69	11.57
110	ER21a	ExonRegion	0	83.58	14.83	21.64	12.85	24.09	41.03	80.57
111	E21_Da	NovelBoundary	0	11.77	5.70	3.25	7.53	20.63	10.00	2.55
112	E21a_E22a	KnownJunction	1	65.66	7.09	18.49	9.54	8.71	41.70	71.49
113	I21_AR1	ActiveIntronRegion	0	7.41	4.32	2.11	2.24	8.35	10.19	1.99
114	I21_AR2	ActiveIntronRegion	1	6.32	11.74	6.10	0.00	6.21	3.95	5.85
115	ER22a	ExonRegion	0	60.22	15.32	22.14	10.31	12.05	37.42	65.60
116	E22_Da	NovelBoundary	0	1.59	1.58	1.22	3.74	9.80	2.71	2.84
117	E22a_E23a	KnownJunction	0	38.52	13.42	12.95	5.96	20.82	30.34	54.32
118	ER23a	ExonRegion	0	26.11	10.93	12.78	7.21	10.68	16.89	33.21