Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C1orf2	Gene	0	45.36	28.66	78.79	45.67	93.24	28.09	195.51
2	323361	Transcript	0	17.95	10.04	36.51	13.27	0.00	10.09	65.91
3	333966	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	368370	Transcript	0	0	0	0	0	0	0	0
5	368368	Transcript	1	0.00	0.00	5.06	6.42	0.00	11.74	3.40
6	340481	Transcript	1	0.80	2.57	7.37	16.80	2.05	10.18	5.78
7	361361	Transcript	0	0	0	0	0	0	0	0
8	350210	Transcript	0	0	0	0	0	0	0	0
9	368366	Transcript	0	1.76	0.36	3.31	7.77	4.42	4.10	3.85
10	ER1a	ExonRegion	0	21.68	29.56	45.85	41.82	50.00	25.50	116.63
11	E1a_E2a	KnownJunction	0	44.61	26.95	86.70	39.69	158.97	21.25	287.66
12	E1a_E3a	KnownJunction	1	0.00	0.00	5.06	6.42	0.00	11.74	3.40
13	E1a_E5a	KnownJunction	0	22.77	31.84	69.72	52.88	24.53	55.50	147.53
14	ER2a	ExonRegion	0	66.60	35.02	107.83	44.08	148.74	16.99	295.48
15	E2a_E3a	KnownJunction	0	81.83	32.24	120.16	43.43	140.65	18.47	276.81
16	E2a_E5a	NovelJunction	1	0.00	1.52	1.75	1.22	1.18	1.34	55.51
17	ER3a	ExonRegion	0	76.84	27.44	127.62	53.28	170.03	30.98	327.93
18	E3_Da	NovelBoundary	1	7.91	1.44	3.15	7.18	3.41	12.27	6.98
19	E3a_E4a	KnownJunction	0	76.37	25.27	153.63	49.85	245.97	30.15	359.76
20	ER4a	ExonRegion	0	110.89	33.34	166.24	47.59	230.55	32.62	352.03
21	E4a_E5a	KnownJunction	0	136.94	39.80	169.25	45.87	153.26	23.77	390.98
22	ER5a	ExonRegion	0	104.02	68.00	169.11	100.73	137.27	62.79	413.03
23	E5a_E6a	KnownJunction	0	5.27	3.70	14.13	7.07	10.65	3.94	23.25
24	E5a_E6b	KnownJunction	0	64.31	40.98	98.57	55.13	78.66	23.53	268.54
25	E5a_E10a	KnownJunction	1	0.80	2.57	7.37	16.80	2.05	10.18	5.78
26	ER6a	ExonRegion	0	24.59	15.79	42.17	19.64	35.84	9.81	98.66
27	ER6b	ExonRegion	0	83.17	39.97	119.17	46.01	176.50	27.57	313.78
28	E6_Ac	KnownBoundary	0	71.93	30.84	94.64	54.72	166.58	33.37	269.73
29	ER6c	ExonRegion	0	39.75	25.30	57.29	34.55	111.04	16.17	199.61
30	E6a_E7a	KnownJunction	0	50.12	28.40	83.81	46.43	127.02	19.64	274.06
31	ER7a	ExonRegion	0	43.88	31.87	86.10	49.23	108.12	22.80	260.23
32	E7_Da	NovelBoundary	0	22.85	27.37	46.82	27.50	44.81	12.22	132.74
33	E7a_E12c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E7b_E8a	KnownJunction	0	48.65	45.34	85.50	58.49	106.57	27.50	280.78
35	ER7b	ExonRegion	0	41.57	42.30	83.50	48.86	100.94	28.42	271.25
36	ER8a	ExonRegion	0	55.46	36.90	92.58	68.01	116.75	21.75	332.54
37	E8a_E9a	KnownJunction	0	1.59	0.00	0.89	8.80	1.18	4.26	0.76
38	E8a_E9b	KnownJunction	1	73.45	33.47	130.20	63.64	133.57	11.74	376.07
39	ER9a	ExonRegion	0	1.94	0.71	5.74	6.74	7.66	3.95	6.94
40	E9_Ab	KnownBoundary	0	2.14	1.63	7.50	6.50	5.12	3.46	5.49
41	ER9b	ExonRegion	0	43.05	21.89	69.78	44.08	90.20	16.47	216.72
42	E9_Da	KnownBoundary	0	14.70	18.39	22.19	23.62	10.19	12.33	50.93
43	E9a_E9c	KnownJunction	0	0.78	0.00	0.00	0.00	0.00	0.00	0.00
44	ER9c	ExonRegion	0	17.63	8.06	15.05	18.11	23.85	9.24	48.21
45	E9_Ac	KnownBoundary	1	44.88	5.31	44.49	23.68	57.38	7.16	138.81
46	ER9d	ExonRegion	1	40.84	16.16	53.18	42.22	60.71	11.42	166.56
47	E9b_E10a	KnownJunction	0	41.29	23.07	62.54	38.25	45.48	16.51	141.61
48	ER10a	ExonRegion	0	41.43	30.44	73.40	54.78	49.94	40.26	191.42
49	E10a_E11a	KnownJunction	0	59.12	36.12	94.21	76.78	56.57	54.59	264.80
50	ER11a	ExonRegion	0	42.14	28.26	74.37	52.68	78.32	35.34	182.92
51	E11a_E12a	KnownJunction	0	27.12	30.45	61.29	29.15	87.79	27.15	129.64
52	ER12a	ExonRegion	0	36.35	27.68	83.21	29.62	97.84	28.62	170.28
53	E12_Da	KnownBoundary	0	24.15	8.22	66.05	18.04	34.42	15.62	96.19
54	E12a_E12b	KnownJunction	0	35.12	20.07	73.02	26.55	0.00	20.18	131.82
55	E12_Ab	KnownBoundary	0	25.22	23.72	38.57	19.72	12.56	20.45	105.59
56	ER12b	ExonRegion	0	52.10	34.74	105.13	38.91	64.63	41.68	198.74
57	ER12c	ExonRegion	0	39.11	28.61	67.64	45.49	76.51	44.42	141.86
58	E12_Db	KnownBoundary	0	38.77	30.55	75.27	46.52	142.14	49.55	176.66
59	ER12d	ExonRegion	0	78.08	36.20	141.35	48.94	170.61	50.96	278.87
60	E12_Ac	KnownBoundary	0	101.14	32.97	194.59	41.77	252.24	56.49	322.69
61	ER12e	ExonRegion	0	70.63	37.85	121.84	58.86	134.57	39.40	260.87
62	E12_Dc	KnownBoundary	0	54.89	32.16	95.52	60.22	83.08	37.55	188.03
63	ER12f	ExonRegion	0	30.57	19.35	69.72	43.15	74.05	23.16	137.38
64	ER12g	ExonRegion	0	9.71	0.00	13.30	4.65	21.79	1.89	12.02