Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COPA	Gene	0	391.46	491.49	384.61	673.07	426.36	879.43	484.57
2	368069	Transcript	0	36.43	36.94	31.18	34.54	32.41	32.63	40.70
3	241704	Transcript	0	384.42	646.51	455.61	820.29	528.86	817.07	592.42
4	ER1a	ExonRegion	0	55.17	81.32	61.46	130.14	90.20	144.07	108.86
5	E1a_E2a	KnownJunction	1	38.94	237.36	58.19	263.81	54.31	441.20	128.32
6	ER2a	ExonRegion	0	254.76	453.71	276.45	596.00	142.22	747.61	394.64
7	E2a_E3a	KnownJunction	0	481.60	541.32	465.67	730.48	430.93	998.24	644.23
8	E2a_E4a	NovelJunction	1	0.83	7.04	5.83	37.60	0.00	31.86	0.72
9	ER3a	ExonRegion	0	383.75	505.45	360.75	644.34	541.88	827.71	490.90
10	E3a_E4a	KnownJunction	0	439.05	532.57	382.60	669.99	598.27	763.50	396.05
11	ER4a	ExonRegion	0	682.04	687.29	529.45	844.13	425.00	1060.49	495.23
12	E4a_E5a	KnownJunction	0	719.47	741.70	508.51	859.14	322.79	1068.94	477.11
13	ER5a	ExonRegion	0	659.67	667.37	505.64	785.99	395.95	1012.18	466.13
14	E5a_E6a	KnownJunction	0	596.75	524.93	491.32	624.45	501.05	845.51	437.29
15	ER6a	ExonRegion	0	545.62	538.89	427.79	676.85	434.61	797.81	449.71
16	E6a_E7a	KnownJunction	0	376.64	484.76	292.31	561.17	394.71	677.47	344.00
17	ER7a	ExonRegion	0	367.81	534.38	367.98	607.44	361.67	685.39	422.75
18	E7a_E8a	KnownJunction	0	283.91	544.48	360.55	625.89	444.67	696.61	479.41
19	ER8a	ExonRegion	0	269.39	503.08	307.92	546.11	309.53	647.84	411.07
20	E8a_E9a	KnownJunction	0	294.64	479.77	329.74	553.71	291.04	574.40	434.83
21	ER9a	ExonRegion	0	253.71	501.99	291.28	575.27	325.67	615.33	410.26
22	E9a_E10a	KnownJunction	0	256.72	539.35	286.88	677.66	404.35	729.65	434.63
23	ER10a	ExonRegion	0	299.79	573.85	316.12	681.22	393.34	718.04	481.97
24	E10a_E11a	KnownJunction	0	307.95	511.69	315.63	645.64	360.36	694.17	469.96
25	ER11a	ExonRegion	0	414.72	667.68	441.18	887.35	488.17	955.09	613.98
26	E11a_E12a	KnownJunction	0	461.08	707.88	439.50	940.28	534.34	1014.45	555.34
27	E11a_E13a	NovelJunction	1	1.03	5.23	2.82	16.72	1.08	33.90	0.00
28	ER12a	ExonRegion	0	501.47	681.34	512.69	971.87	537.52	1035.29	659.58
29	E12a_E13a	KnownJunction	0	519.14	673.10	563.66	950.95	589.76	1087.70	740.85
30	ER13a	ExonRegion	0	433.39	633.29	503.47	878.68	556.71	918.51	681.59
31	E13a_E14a	KnownJunction	0	326.17	591.29	375.44	758.50	465.04	729.68	527.87
32	E13a_E15a	NovelJunction	1	27.47	26.85	32.20	69.08	2.01	116.63	0.00
33	ER14a	ExonRegion	0	405.82	571.47	396.63	755.10	574.98	705.42	528.52
34	E14a_E15a	KnownJunction	0	545.26	562.71	469.34	744.82	596.26	677.02	570.46
35	ER15a	ExonRegion	0	471.43	693.08	478.63	884.76	496.07	902.04	649.18
36	E15a_E16a	KnownJunction	0	404.55	568.15	418.21	732.71	431.99	731.18	536.68
37	ER16a	ExonRegion	0	570.48	752.17	593.32	925.25	623.17	986.91	731.38
38	E16a_E17a	KnownJunction	0	29.96	26.32	22.73	19.29	23.51	16.70	30.48
39	E16a_E17b	KnownJunction	0	384.42	646.51	455.61	820.29	528.86	817.07	592.42
40	ER17a	ExonRegion	0	42.90	47.55	39.63	49.79	41.30	48.56	50.91
41	ER17b	ExonRegion	0	397.62	608.51	453.82	809.08	503.01	828.13	624.98
42	E17a_E18a	KnownJunction	0	354.98	520.31	438.02	707.13	480.84	710.41	570.55
43	E17a_E20a	NovelJunction	0	3.37	11.77	5.63	15.31	2.17	24.47	0.73
44	ER18a	ExonRegion	0	310.28	537.05	395.56	714.79	456.99	650.67	548.08
45	E18a_E19a	KnownJunction	0	305.61	462.93	407.61	648.26	456.24	559.12	488.13
46	ER19a	ExonRegion	0	362.26	551.45	445.42	739.18	513.24	737.04	575.68
47	E19a_E20a	KnownJunction	0	343.53	540.32	458.70	791.28	506.66	791.42	498.15
48	ER20a	ExonRegion	0	415.14	576.21	522.22	806.28	526.67	867.44	637.48
49	E20a_E21a	KnownJunction	0	452.45	597.73	497.98	878.05	660.72	979.88	602.11
50	ER21a	ExonRegion	0	432.67	580.01	498.63	782.00	548.87	873.43	636.52
51	E21a_E22a	KnownJunction	0	511.41	554.38	532.44	783.34	584.37	790.78	644.87
52	ER22a	ExonRegion	0	543.17	629.43	540.18	858.39	617.61	980.47	704.15
53	E22a_E23a	KnownJunction	0	582.76	684.92	558.83	940.68	788.34	1117.12	780.09
54	ER23a	ExonRegion	0	566.84	687.04	540.37	942.43	652.30	1002.81	748.99
55	E23a_E24a	KnownJunction	0	498.13	656.60	459.02	813.90	569.41	920.33	640.44
56	ER24a	ExonRegion	0	425.30	607.58	422.94	857.26	557.05	873.93	636.05
57	E24a_E25a	KnownJunction	0	398.52	507.38	452.54	704.53	608.78	794.96	585.95
58	E24a_E26a	NovelJunction	0	0.92	29.14	0.00	21.51	3.39	27.52	3.74
59	ER25a	ExonRegion	0	344.39	533.27	397.09	743.56	537.42	784.75	608.15
60	E25a_E26a	KnownJunction	0	363.82	502.55	413.20	706.73	423.09	809.51	596.62
61	ER26a	ExonRegion	0	348.09	536.58	445.67	728.13	411.01	882.03	615.84
62	E26a_E27a	KnownJunction	0	344.78	612.57	457.91	798.54	501.84	995.91	604.11
63	ER27a	ExonRegion	0	337.54	584.40	421.60	800.39	513.22	887.68	617.44
64	E27a_E28a	KnownJunction	0	350.02	555.43	420.46	770.82	454.05	844.92	577.00
65	ER28a	ExonRegion	0	507.06	664.29	511.75	925.78	541.40	1055.10	673.96
66	E28a_E29a	KnownJunction	0	521.78	697.11	566.95	1004.89	522.38	1354.41	692.48
67	ER29a	ExonRegion	0	579.97	751.80	594.83	1105.82	650.13	1413.53	773.55
68	E29a_E30a	KnownJunction	0	474.80	700.95	513.52	1061.43	666.27	1250.26	704.58
69	ER30a	ExonRegion	0	504.47	718.35	527.58	1042.99	675.74	1495.69	719.86
70	E30a_E31a	KnownJunction	0	513.87	753.75	557.77	1090.12	738.91	1695.94	802.57
71	ER31a	ExonRegion	0	489.85	795.96	526.31	1099.42	568.04	1717.27	763.70
72	E31a_E32a	KnownJunction	0	502.80	742.25	496.73	1035.50	582.20	1495.99	703.21
73	ER32a	ExonRegion	0	636.28	875.87	663.04	1262.35	913.51	1925.53	955.20
74	E32a_E33a	KnownJunction	0	437.49	845.84	425.00	1091.50	410.78	1786.63	586.41
75	ER33a	ExonRegion	0	369.93	305.77	295.84	457.40	313.11	841.58	294.93
76	IG41_AR2	ActiveIntergenicRegion	0	1.00	8.86	0.90	4.91	0.00	7.22	5.84
77	IG41_SR1	SilentIntergenicRegion	0	0.57	0.83	0.90	3.78	0.16	8.28	1.23