Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ADAMTSL4	Gene	0	10.86	12.07	18.77	13.24	7.14	35.76	108.08
2	369041	Transcript	0	1.39	1.87	2.81	3.04	0.86	1.58	8.31
3	271643	Transcript	0	0	0	0	0	0	0	0
4	369038	Transcript	0	2.80	9.26	6.01	6.23	0.91	8.29	4.33
5	369039	Transcript	0	0	0	0	0	0	0	0
6	407995	Transcript	0	5.67	15.42	15.09	16.17	4.47	30.34	53.71
7	IG25_AR1	ActiveIntergenicRegion	0	1.16	1.06	1.90	1.83	0.32	18.69	4.78
8	IG25_AR3	ActiveIntergenicRegion	0	4.85	1.35	4.85	2.85	3.45	10.41	0.72
9	IG25_AR4	ActiveIntergenicRegion	0	10.93	1.80	6.14	5.19	5.05	7.71	0.54
10	IG25_AR6	ActiveIntergenicRegion	0	7.84	3.41	9.06	7.08	0.57	14.30	4.40
11	IG25_SR5	SilentIntergenicRegion	0	5.63	3.89	8.47	4.99	0.24	9.42	2.09
12	IG25_AR7	ActiveIntergenicRegion	0	1.92	7.01	4.99	0.33	0.00	9.19	3.19
13	ER1a	ExonRegion	0	1.02	0.00	1.76	2.08	1.73	1.88	12.91
14	ER1b	ExonRegion	1	4.09	0.00	7.96	4.36	8.74	17.15	87.01
15	E1a_E2a	KnownJunction	1	0.00	0.00	3.98	2.74	0.00	18.09	63.13
16	I1	Intron	0	5.63	13.37	8.77	4.72	0.32	11.38	5.29
17	I1_SR1	SilentIntronRegion	0	4.44	8.61	7.66	4.14	0.19	7.99	5.23
18	I1_AR1	ActiveIntronRegion	1	7.14	19.26	10.23	5.48	0.47	15.60	5.44
19	E2_Aa	NovelBoundary	0	11.02	14.11	12.39	11.05	0.95	20.07	12.64
20	ER2a	ExonRegion	1	1.68	0.44	3.96	3.47	1.28	18.74	42.62
21	E2_Da	NovelBoundary	1	8.14	16.63	17.82	7.96	0.00	19.38	1.88
22	E2a_E3b	KnownJunction	1	1.77	1.42	1.44	2.90	0.97	12.76	28.51
23	I2	Intron	1	12.81	26.05	21.03	14.29	1.31	22.69	13.25
24	I2_AR1	ActiveIntronRegion	1	13.42	27.07	21.72	14.71	1.30	23.76	13.63
25	I2_SR1	SilentIntronRegion	0	7.16	16.73	14.69	10.44	1.37	12.84	9.80
26	E3_Aa	NovelBoundary	0	19.33	21.52	24.36	16.15	7.22	22.70	13.34
27	ER3a	ExonRegion	0	5.60	18.51	12.01	12.46	1.81	16.57	8.66
28	E3_Ab	KnownBoundary	0	6.91	21.38	11.07	13.55	3.04	24.68	11.51
29	ER3b	ExonRegion	0	8.75	12.93	19.05	14.04	3.08	42.69	76.49
30	E3_Da	NovelBoundary	0	2.50	17.79	6.15	5.09	0.00	8.98	2.21
31	E3a_E4a	KnownJunction	1	7.08	2.71	10.15	7.78	12.68	45.45	116.23
32	ER3c	ExonRegion	1	7.56	3.58	11.73	7.28	9.12	45.10	103.32
33	I3	Intron	0	5.29	12.60	9.62	7.27	0.70	17.89	5.02
34	I3_SR1	SilentIntronRegion	0	5.64	13.37	10.16	7.83	0.75	19.05	5.41
35	E4_Aa	NovelBoundary	1	9.03	23.59	17.26	9.21	0.00	22.91	5.33
36	ER4a	ExonRegion	1	4.89	3.37	9.40	6.39	13.54	46.63	124.90
37	E4_Da	NovelBoundary	1	6.14	16.73	7.08	4.17	0.00	2.76	6.13
38	E4a_E5a	KnownJunction	1	4.92	1.37	12.65	8.15	3.46	46.39	122.61
39	E5_Aa	NovelBoundary	1	2.32	9.27	13.54	5.39	0.00	4.53	4.34
40	ER5a	ExonRegion	1	8.84	3.71	13.95	11.34	5.01	35.99	94.29
41	E5a_E6a	KnownJunction	1	11.97	0.00	12.11	5.82	9.82	30.36	129.84
42	I5	Intron	0	6.88	13.33	11.84	4.86	1.68	14.57	9.21
43	I5_SR1	SilentIntronRegion	1	6.97	13.46	11.97	4.90	1.70	14.72	9.31
44	E6_Aa	NovelBoundary	0	11.35	22.07	17.96	8.02	2.24	29.37	6.21
45	ER6a	ExonRegion	0	14.20	16.34	21.43	13.17	7.29	40.58	149.44
46	E6_Da	NovelBoundary	0	11.78	13.98	12.17	6.42	4.43	19.00	9.96
47	E6a_E7a	KnownJunction	1	10.05	1.58	11.21	1.68	8.83	22.73	137.11
48	I6	Intron	0	4.93	10.26	8.40	5.48	0.68	8.46	7.16
49	I6_SR1	SilentIntronRegion	1	5.35	11.31	8.99	6.06	0.68	9.12	7.71
50	E7_Aa	NovelBoundary	0	7.21	17.52	14.04	10.73	2.21	11.20	6.33
51	ER7a	ExonRegion	0	8.22	7.45	14.11	5.56	6.20	27.08	104.44
52	E7_Da	NovelBoundary	1	2.67	21.94	13.74	11.59	2.19	13.08	6.15
53	E7a_E8a	KnownJunction	1	8.43	0.00	15.38	2.82	6.48	26.80	125.40
54	I7	Intron	0	9.37	20.25	16.41	13.09	1.36	15.36	10.84
55	I7_SR1	SilentIntronRegion	0	2.47	9.79	8.53	7.18	0.00	7.71	5.92
56	I7_AR1	ActiveIntronRegion	1	11.21	26.27	20.73	15.58	1.73	19.93	13.54
57	I7_SR2	SilentIntronRegion	0	7.01	6.94	7.04	8.35	0.89	5.15	5.00
58	E8_Aa	NovelBoundary	0	10.40	18.34	14.18	10.59	1.13	11.82	9.06
59	ER8a	ExonRegion	0	15.41	12.66	27.72	16.63	9.90	39.23	137.53
60	E8_Da	NovelBoundary	1	15.87	31.74	21.40	26.58	4.89	20.48	31.80
61	E8a_E9a	KnownJunction	1	6.04	2.08	12.93	8.94	3.34	34.41	130.01
62	I8	Intron	1	11.00	15.38	15.58	12.16	2.83	16.40	10.53
63	I8_AR1	ActiveIntronRegion	1	16.21	21.29	22.31	16.83	3.13	22.49	15.92
64	I8_AR2	ActiveIntronRegion	0	2.94	9.74	6.84	7.78	1.21	11.20	1.20
65	E9_Aa	NovelBoundary	0	10.71	19.26	10.91	17.18	0.97	16.29	6.52
66	E9_Ab	NovelBoundary	0	12.05	20.31	16.34	19.99	3.99	39.99	90.26
67	ER9a	ExonRegion	1	6.64	6.07	17.22	12.20	4.34	47.38	144.07
68	ER9b	ExonRegion	0	17.06	19.04	31.69	25.45	8.98	51.84	143.54
69	E9_Da	NovelBoundary	0	6.71	26.09	14.10	15.58	1.11	20.34	6.25
70	E9a_E10a	KnownJunction	0	2.57	2.94	8.13	3.12	14.75	19.59	63.17
71	I9	Intron	0	9.01	24.29	22.08	18.20	1.28	17.92	11.44
72	I9_AR1	ActiveIntronRegion	0	9.08	24.47	22.24	18.33	1.29	18.04	11.52
73	E10_Aa	NovelBoundary	1	7.64	34.18	19.93	18.61	0.95	27.42	6.19
74	E10a_E10b	KnownJunction	0	5.67	15.42	15.09	16.17	4.47	30.34	53.71
75	E10_Ab	NovelBoundary	0	15.19	10.67	21.94	16.31	8.02	27.68	85.60
76	ER10a	ExonRegion	0	6.92	10.06	17.61	12.19	13.81	31.47	96.80
77	ER10b	ExonRegion	0	11.53	13.77	23.03	19.12	15.39	42.09	104.34
78	ER10c	ExonRegion	0	24.75	27.42	47.01	27.35	6.77	81.17	139.06
79	E10_Db	NovelBoundary	1	10.15	22.70	34.66	12.62	1.18	48.05	20.81
80	E10b_E11a	KnownJunction	1	6.63	1.42	14.11	11.46	4.56	29.80	101.62
81	I10	Intron	0	6.05	19.32	14.60	8.96	1.09	15.71	5.16
82	I10_SR1	SilentIntronRegion	0	6.12	19.57	14.77	9.08	1.10	15.91	5.21
83	E11_Aa	NovelBoundary	1	13.40	25.75	35.05	18.72	0.00	30.90	23.92
84	ER11a	ExonRegion	1	30.22	7.40	41.85	16.46	9.08	55.16	139.04
85	E11_Da	NovelBoundary	1	6.83	13.77	10.49	8.91	0.00	10.29	1.28
86	E11a_E12a	KnownJunction	1	5.89	0.00	8.39	6.29	5.12	16.29	50.03
87	E12_Aa	NovelBoundary	0	8.46	13.24	4.44	3.33	0.00	6.91	1.55
88	ER12a	ExonRegion	0	7.13	7.41	10.63	7.91	5.07	19.77	61.46
89	E12_Da	NovelBoundary	1	8.56	21.99	10.10	7.02	2.31	5.41	5.32
90	E12a_E13a	KnownJunction	1	4.51	0.00	9.14	2.90	3.07	11.42	69.72
91	I12	Intron	0	2.69	9.93	8.21	6.57	1.04	7.01	2.87
92	I12_SR1	SilentIntronRegion	0	2.72	10.06	8.30	6.64	1.05	7.09	2.91
93	E13_Aa	NovelBoundary	0	9.90	31.16	12.34	11.22	0.00	12.54	4.43
94	ER13a	ExonRegion	0	10.71	14.76	12.42	10.47	5.21	18.50	83.95
95	E13_Da	NovelBoundary	0	8.29	24.62	14.38	9.94	2.12	11.47	6.48
96	E13a_E14a	KnownJunction	1	3.35	0.00	2.13	4.42	6.55	9.09	77.35
97	I13	Intron	0	8.23	15.78	15.78	10.62	1.54	11.86	7.01
98	I13_SR1	SilentIntronRegion	0	9.41	12.35	15.34	9.02	1.12	9.93	6.02
99	I13_AR1	ActiveIntronRegion	1	12.80	24.64	28.56	13.21	2.78	17.13	11.89
100	I13_SR2	SilentIntronRegion	1	8.64	23.89	25.97	18.18	2.02	15.84	10.91
101	I13_AR2	ActiveIntronRegion	0	7.18	15.22	13.50	10.40	1.47	11.55	6.42
102	E14_Aa	NovelBoundary	0	2.37	10.64	4.61	9.27	2.35	10.18	4.37
103	ER14a	ExonRegion	0	6.31	11.24	14.40	12.09	3.37	24.16	67.77
104	E14_Da	NovelBoundary	1	3.45	23.49	19.66	23.60	1.18	14.15	7.15
105	E14a_E15a	KnownJunction	1	2.22	0.00	3.65	1.57	4.24	14.45	75.20
106	I14	Intron	0	7.50	18.85	21.50	17.30	3.67	15.25	13.94
107	I14_AR1	ActiveIntronRegion	0	7.54	18.96	21.63	17.41	3.69	15.34	14.02
108	E15_Aa	NovelBoundary	0	6.34	30.42	14.51	20.05	0.00	20.90	9.85
109	ER15a	ExonRegion	0	13.74	22.98	20.35	13.55	6.28	30.61	102.63
110	E15_Da	KnownBoundary	1	1.50	33.36	9.90	12.03	2.35	27.26	11.75
111	E15a_E16a	KnownJunction	1	6.91	1.08	12.99	3.36	8.53	21.12	101.82
112	ER15b	ExonRegion	1	4.21	25.53	9.86	11.67	0.56	11.80	7.92
113	E15_Db	NovelBoundary	0	10.05	18.23	15.10	12.49	0.00	4.40	9.33
114	E15_Dc	NovelBoundary	0	7.04	16.21	10.03	7.69	0.00	8.92	5.69
115	ER15c	ExonRegion	0	1.76	3.75	3.87	4.00	0.00	1.28	3.71
116	I15	Intron	0	2.68	7.76	6.45	4.00	0.23	8.29	3.38
117	I15_SR1	SilentIntronRegion	0	2.70	7.81	6.49	4.02	0.24	8.33	3.40
118	E16_Aa	NovelBoundary	0	8.63	15.24	12.20	9.97	0.00	4.53	3.83
119	ER16a	ExonRegion	0	13.72	14.36	19.43	17.04	10.26	32.94	116.10
120	E16_Da	KnownBoundary	0	14.19	19.28	17.88	20.43	15.70	42.96	145.38
121	ER16b	ExonRegion	0	13.13	10.11	19.62	22.39	11.88	41.35	125.21
122	E16_Db	NovelBoundary	1	10.11	24.41	5.60	12.38	0.00	7.37	3.84
123	E16b_E17a	KnownJunction	1	15.00	0.00	20.65	13.36	19.48	38.67	138.34
124	I16	Intron	0	1.61	9.14	5.25	7.00	0.97	6.89	2.52
125	I16_SR1	SilentIntronRegion	0	1.64	9.35	5.37	7.14	0.99	7.05	2.57
126	E17_Aa	NovelBoundary	0	2.64	23.17	10.23	12.71	1.18	25.78	3.53
127	ER17a	ExonRegion	0	16.81	20.54	35.55	26.74	18.41	75.88	237.27
128	E17_Da	NovelBoundary	1	3.94	34.65	19.34	23.08	0.00	31.65	6.88
129	E17a_E18a	KnownJunction	1	24.43	6.62	31.99	14.25	11.64	73.70	370.93
130	I17	Intron	1	4.37	28.47	17.05	12.24	1.69	11.08	5.39
131	I17_SR1	SilentIntronRegion	1	4.40	28.64	17.16	12.32	1.70	11.15	5.42
132	E18_Aa	NovelBoundary	1	5.29	21.81	21.86	18.91	1.11	8.95	6.99
133	ER18a	ExonRegion	0	13.06	15.01	27.59	16.98	18.46	83.37	265.65
134	E18_Da	NovelBoundary	1	9.55	20.96	17.34	5.45	1.04	12.03	8.47
135	E18a_E19a	KnownJunction	1	11.58	2.42	15.38	15.90	29.78	59.44	286.47
136	I18	Intron	1	3.27	11.98	12.85	7.38	0.27	7.21	5.94
137	I18_SR1	SilentIntronRegion	1	3.31	12.13	13.00	7.48	0.27	7.29	6.01
138	E19_Aa	NovelBoundary	0	10.73	20.44	24.16	12.92	0.00	19.40	10.16
139	ER19a	ExonRegion	0	5.41	6.42	10.80	8.82	5.49	19.69	64.32
140	ER19b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00