Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 AP4B1 Gene 0 46.96 43.21 21.72 12.47 28.84 24.82 39.34 2 369564 Transcript 0 0.88 2.71 0.78 2.15 0.20 1.85 0.54 3 369566 Transcript 0 0 0 0 0 0 0 0 4 256658 Transcript 0 0 0 0 0 0 0 0 5 369565 Transcript 0 0 0 0 0 0 0 0 6 369571 Transcript 0 0 0 0 0 0 0 0 7 369569 Transcript 0 4.23 4.00 1.77 2.58 4.58 0.42 4.92 8 369567 Transcript 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 0.88 2.71 0.78 2.15 0.20 1.85 0.54 10 E1_Ab KnownBoundary 0 1.30 3.23 1.55 0.00 1.18 1.63 0.85 11 ER1b ExonRegion 0 4.66 7.51 1.34 1.14 8.55 2.83 4.34 12 E1_Ac KnownBoundary 0 9.33 13.03 2.37 4.23 17.08 6.03 9.13 13 ER1c ExonRegion 0 7.68 9.82 1.76 4.15 4.55 5.28 5.91 14 E1_Da KnownBoundary 0 2.64 0.00 0.00 0.00 0.00 0.00 1.68 15 E1a_E1e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Db KnownBoundary 0 1.39 1.50 0.00 1.46 0.00 1.66 0.69 17 E1b_E1f KnownJunction 0 1.03 5.15 0.85 0.00 1.06 1.66 5.47 18 ER1d ExonRegion 0 6.37 9.37 1.06 3.74 0.93 4.20 6.36 19 ER1e ExonRegion 0 4.23 4.00 1.77 2.58 4.58 0.42 4.92 20 E1_Ad KnownBoundary 0 0.85 3.02 1.44 5.39 5.39 0.00 8.90 21 ER1f ExonRegion 0 6.80 4.53 2.52 4.65 7.17 0.00 7.22 22 E1_Ae KnownBoundary 0 2.85 1.63 0.73 0.00 2.84 0.00 0.00 23 E1_Af KnownBoundary 0 5.44 2.63 1.87 2.68 3.07 0.00 2.19 24 ER1g ExonRegion 0 10.37 7.90 3.05 4.99 8.91 0.61 8.43 25 ER1h ExonRegion 0 39.45 37.60 16.79 14.96 18.10 21.17 38.39 26 E1_Dc NovelBoundary 1 7.13 14.42 11.12 5.53 12.31 6.24 16.83 27 E1c_E2a KnownJunction 0 50.05 40.64 13.45 8.78 32.11 27.28 39.30 28 E1c_E3a KnownJunction 0 0.63 1.63 1.28 0.00 4.08 1.66 1.55 29 E1c_E5a KnownJunction 0 0.63 1.21 2.21 0.00 2.31 1.66 0.00 30 E2_Aa NovelBoundary 0 20.21 8.96 6.05 1.52 18.33 1.34 19.48 31 ER2a ExonRegion 0 73.14 55.22 26.19 11.97 41.01 30.24 59.06 32 E2_Da NovelBoundary 0 10.85 7.04 3.19 1.08 13.05 1.18 10.29 33 E2a_E3a KnownJunction 0 55.69 50.05 22.04 10.13 46.84 32.37 52.15 34 E3_Aa NovelBoundary 1 10.21 10.30 3.97 5.55 18.95 1.31 18.75 35 ER3a ExonRegion 0 63.76 57.49 29.15 10.70 43.61 34.66 69.23 36 E3a_E4a KnownJunction 0 82.28 57.06 34.14 13.55 30.11 27.98 70.75 37 ER4a ExonRegion 0 57.73 56.64 31.87 12.93 36.95 23.56 67.57 38 E4a_E5a KnownJunction 0 55.33 51.15 25.02 15.52 22.34 32.62 68.40 39 E5_Aa NovelBoundary 1 50.54 15.29 13.49 2.44 5.00 8.01 10.13 40 ER5a ExonRegion 0 50.47 50.47 28.55 12.59 35.04 22.06 53.27 41 E5a_E6a KnownJunction 1 31.53 43.98 14.90 3.39 22.06 21.92 40.47 42 ER6a ExonRegion 0 39.52 53.01 29.03 15.02 38.10 22.99 46.24 43 E6a_E7a KnownJunction 0 43.79 48.76 30.55 16.25 44.26 28.11 44.67 44 ER7a ExonRegion 0 57.08 67.12 33.49 18.56 40.40 25.68 49.87 45 E7a_E8a KnownJunction 0 48.90 62.95 28.61 21.43 39.31 34.46 38.32 46 ER8a ExonRegion 0 68.53 75.92 32.33 24.87 47.82 48.95 47.73 47 E8a_E9a KnownJunction 0 52.12 58.19 21.54 19.42 32.23 42.99 38.81 48 ER9a ExonRegion 0 69.82 63.57 28.74 18.01 49.94 40.27 48.64 49 E9a_E10a KnownJunction 0 101.99 48.37 34.95 23.62 38.68 48.88 55.13 50 ER10a ExonRegion 0 67.09 50.02 25.95 18.11 27.70 41.11 41.20 51 E10_Da KnownBoundary 0 11.13 4.97 2.66 0.00 6.43 1.45 3.44 52 ER10b ExonRegion 0 6.11 3.18 3.80 0.60 2.30 1.00 1.80