Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ST7L	Gene	0	21.82	17.31	53.01	31.87	23.16	32.67	15.22
2	369665	Transcript	0	0.01	0.00	0.00	0.00	0.89	0.11	0.43
3	343210	Transcript	0	0	0	0	0	0	0	0
4	369668	Transcript	1	7.88	17.80	19.54	30.64	0.00	44.65	1.87
5	358039	Transcript	0	0	0	0	0	0	0	0
6	360743	Transcript	0	0	0	0	0	0	0	0
7	369673	Transcript	0	0.00	0.00	1.58	0.00	0.00	0.00	0.87
8	361846	Transcript	0	0	0	0	0	0	0	0
9	369666	Transcript	0	12.58	2.92	16.31	2.42	16.56	4.34	5.14
10	369669	Transcript	0	1.51	2.97	3.27	2.67	2.24	2.27	0.40
11	369664	Transcript	0	3.68	4.73	6.17	5.12	9.53	5.72	1.76
12	369670	Transcript	0	0	0	0	0	0	0	0
13	ER1a	ExonRegion	0	1.16	3.01	1.07	3.03	0.72	3.84	1.62
14	E1_Ab	KnownBoundary	0	1.70	9.64	2.49	6.07	0.00	11.85	3.97
15	ER1b	ExonRegion	0	8.35	26.20	15.28	30.24	13.13	25.37	13.85
16	E1_Ac	NovelBoundary	1	10.35	27.51	26.28	39.61	10.26	65.50	19.45
17	E1a_E3a	KnownJunction	0	29.41	27.72	61.06	42.70	20.72	47.76	34.05
18	E1a_E3b	KnownJunction	0	0.93	1.18	5.46	1.65	3.99	10.34	1.98
19	E1a_E4a	NovelJunction	1	10.55	7.12	7.10	15.66	0.99	12.49	0.00
20	ER1c	ExonRegion	0	23.09	36.32	54.19	57.16	21.44	62.53	31.49
21	ER1d	ExonRegion	0	0.93	7.37	4.48	3.54	3.29	2.24	1.19
22	E1b_E3a	KnownJunction	0	0.00	0.00	0.00	1.41	0.00	0.00	0.00
23	I1	Intron	0	9.52	6.20	8.20	6.53	8.21	2.61	4.06
24	I1_SR1	SilentIntronRegion	0	14.98	6.75	10.77	4.95	9.50	2.38	4.06
25	I1_AR2	ActiveIntronRegion	0	11.43	8.05	9.62	9.87	12.60	4.73	6.15
26	E2_Aa	NovelBoundary	1	4.36	0.97	8.81	9.48	9.57	10.85	5.06
27	ER2a	ExonRegion	0	3.68	4.73	6.17	5.12	9.53	5.72	1.76
28	E2_Ab	KnownBoundary	0	7.98	0.00	7.60	4.52	9.75	3.03	1.49
29	ER2b	ExonRegion	0	2.52	0.03	3.74	1.42	3.91	0.78	0.00
30	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER3a	ExonRegion	0	30.10	36.84	68.99	48.82	58.71	53.57	43.02
32	E3_Ab	KnownBoundary	0	28.96	38.93	66.59	48.60	90.90	59.44	43.31
33	E3a_E4a	KnownJunction	0	31.51	46.87	75.89	54.83	48.13	65.31	26.30
34	ER3b	ExonRegion	0	30.51	47.14	75.93	51.61	71.42	69.21	37.84
35	ER4a	ExonRegion	0	43.66	60.88	106.24	83.59	62.62	73.98	40.26
36	E4_Da	NovelBoundary	1	10.56	42.19	16.81	26.12	14.87	12.81	9.97
37	E4a_E5a	KnownJunction	0	32.81	17.08	97.88	50.99	50.35	33.98	17.93
38	E4a_E6a	KnownJunction	0	3.59	1.55	5.32	3.06	3.43	4.58	0.00
39	E5_Aa	NovelBoundary	1	16.07	0.00	41.13	1.52	1.84	4.72	0.00
40	ER5a	ExonRegion	0	28.91	20.56	106.51	55.77	45.56	43.07	25.79
41	E5a_E6a	KnownJunction	0	22.58	22.99	91.01	59.55	45.41	45.45	27.16
42	ER6a	ExonRegion	0	43.18	24.79	111.91	67.69	60.49	54.23	25.47
43	E6a_E7a	KnownJunction	0	40.09	26.61	106.28	54.81	49.70	46.47	23.90
44	E6a_E9a	NovelJunction	0	2.79	0.00	4.12	9.10	0.00	1.66	0.89
45	E7_Aa	NovelBoundary	1	14.60	1.31	46.55	1.27	3.23	2.92	0.00
46	ER7a	ExonRegion	0	26.28	20.42	84.82	55.72	49.52	46.59	19.27
47	E7a_E8a	KnownJunction	1	22.70	14.97	51.65	57.11	49.49	29.85	12.31
48	E7a_E9a	NovelJunction	0	5.12	6.62	17.83	8.78	2.12	15.36	2.91
49	ER8a	ExonRegion	0	36.13	28.78	89.26	48.85	49.97	30.71	19.48
50	E8a_E9a	KnownJunction	1	42.66	31.84	109.21	54.51	54.36	26.93	13.51
51	ER9a	ExonRegion	1	58.21	34.87	136.77	57.81	60.71	40.07	19.91
52	E9a_E10a	KnownJunction	0	74.27	37.78	165.06	58.71	52.12	39.99	30.50
53	E9a_E15a	KnownJunction	0	0.00	0.00	1.58	0.00	0.00	0.00	0.87
54	ER10a	ExonRegion	1	63.16	34.38	157.11	48.64	54.32	49.23	20.40
55	E10a_E11a	KnownJunction	1	56.58	24.12	136.59	44.75	59.45	55.13	12.71
56	ER11a	ExonRegion	0	51.98	25.68	132.88	55.45	50.75	44.64	22.03
57	E11a_E12a	KnownJunction	0	42.16	31.87	114.85	54.99	40.39	45.08	26.01
58	ER12a	ExonRegion	0	43.77	19.53	100.45	41.83	50.47	47.78	18.25
59	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	E12a_E15a	KnownJunction	1	34.55	11.38	83.56	21.21	34.63	15.25	10.38
61	I12_AR1	ActiveIntronRegion	0	4.97	3.17	9.28	1.85	8.67	3.36	4.11
62	ER13a	ExonRegion	0	0.02	0.00	0.00	0.00	2.68	0.32	1.28
63	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E15_Aa	NovelBoundary	0	5.07	0.00	7.79	0.00	8.88	5.92	4.92
65	ER15a	ExonRegion	0	43.01	20.39	113.34	40.03	44.52	34.73	21.15
66	E15_Da	NovelBoundary	0	4.22	1.52	4.86	1.63	7.49	8.71	10.20
67	E15a_E16a	KnownJunction	0	29.44	18.07	64.95	27.44	45.14	30.85	10.52
68	E15a_E17a	KnownJunction	1	10.60	9.48	39.63	17.56	17.84	11.87	4.53
69	ER16a	ExonRegion	0	36.69	19.53	86.71	31.70	46.62	46.17	15.97
70	E16a_E17a	KnownJunction	1	42.33	24.43	95.29	36.76	41.68	46.58	12.35
71	ER17a	ExonRegion	0	67.25	45.38	147.51	80.90	64.31	83.22	26.33
72	E17_Da	KnownBoundary	0	14.89	6.54	26.21	5.36	15.38	4.58	5.69
73	E17a_E18a	KnownJunction	1	9.95	27.16	30.32	47.49	0.00	64.88	2.67
74	E17a_E19a	KnownJunction	0	34.40	12.72	60.92	28.77	46.98	40.90	13.97
75	ER17b	ExonRegion	0	18.99	5.64	30.46	5.50	19.85	5.47	8.91
76	E17_Db	KnownBoundary	0	16.34	5.44	19.79	4.44	24.85	2.81	7.25
77	ER17c	ExonRegion	0	12.58	2.92	16.31	2.42	16.56	4.34	5.14
78	E17_Dc	NovelBoundary	0	9.03	2.76	16.80	4.12	13.85	7.50	2.75
79	ER18a	ExonRegion	0	5.81	8.44	8.75	13.78	0.00	24.43	1.07
80	E18_Da	NovelBoundary	0	5.94	11.85	26.74	16.34	7.61	29.51	7.25
81	I18	Intron	0	3.50	4.17	5.94	3.33	2.81	7.92	4.01
82	I18_AR4	ActiveIntronRegion	0	5.54	7.40	7.93	6.09	3.71	14.75	5.80
83	I18_AR5	ActiveIntronRegion	1	6.19	8.82	5.62	5.61	0.43	16.55	4.65
84	I18_AR6	ActiveIntronRegion	1	4.19	9.95	8.51	9.58	3.43	20.02	8.49
85	I18_AR7	ActiveIntronRegion	0	5.43	4.51	7.87	4.36	2.97	13.68	6.05
86	E19_Aa	NovelBoundary	1	10.10	3.60	11.15	1.68	4.26	12.94	5.39
87	ER19a	ExonRegion	0	42.42	22.10	93.75	49.43	35.55	53.71	18.65
88	E19_Da	KnownBoundary	0	58.18	28.19	129.85	66.45	52.61	36.37	20.65
89	ER19b	ExonRegion	0	13.48	11.52	34.18	25.37	10.16	30.06	13.90
90	IG30	Intergenic	0	5.27	6.70	8.96	8.56	2.78	13.68	5.76
91	IG30_AR2	ActiveIntergenicRegion	0	7.26	9.02	12.34	11.80	3.71	18.35	7.34
92	IG30_SR1	SilentIntergenicRegion	0	4.49	4.47	7.53	6.47	1.42	11.69	4.42
93	IG30_AR1	ActiveIntergenicRegion	0	3.08	5.16	5.34	5.63	2.51	8.72	4.59