Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RP4-644F6.3	Gene	0	2.84	2.16	8.85	3.43	0.40	7.14	2.70
2	401995	Transcript	0	2.04	1.50	6.62	2.59	0.28	5.68	1.86
3	ER1a	ExonRegion	0	6.33	1.70	17.08	7.46	0.22	21.40	4.02
4	E1_Da	NovelBoundary	0	1.89	1.63	9.71	9.24	0.00	6.27	0.00
5	E1a_E2a	KnownJunction	0	3.14	2.71	18.44	7.07	0.00	19.19	1.92
6	ER2a	ExonRegion	0	3.16	1.03	9.92	8.68	0.65	16.19	7.65
7	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER3a	ExonRegion	0	1.49	1.73	13.97	4.56	0.75	13.56	5.03
9	E3_Da	NovelBoundary	0	3.34	1.13	18.87	6.20	0.97	22.99	6.16
10	E3a_E4a	KnownJunction	0	0.00	0.00	1.44	0.00	0.00	1.13	0.69
11	I3	Intron	0	1.48	1.05	17.41	1.79	2.03	15.12	4.65
12	I3_AR1	ActiveIntronRegion	0	1.48	1.06	17.52	1.81	2.04	15.23	4.68
13	E4_Aa	NovelBoundary	0	7.68	0.00	21.31	2.76	2.35	7.02	3.45
14	ER4a	ExonRegion	0	1.92	0.00	9.30	1.57	1.37	8.28	3.80
15	E4_Da	NovelBoundary	0	8.83	0.00	26.96	5.93	2.01	11.95	4.44
16	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E5_Aa	NovelBoundary	0	9.45	8.88	14.92	4.31	0.00	5.68	5.37
18	ER5a	ExonRegion	0	2.27	2.69	7.89	2.61	0.14	3.57	1.94
19	E5_Da	NovelBoundary	0	2.90	0.00	9.50	4.09	0.97	2.92	1.78
20	E5a_E6a	KnownJunction	0	1.29	0.00	0.63	0.00	0.00	1.58	0.00
21	I5	Intron	0	1.52	0.29	12.38	2.27	0.66	1.34	2.53
22	I5_AR1	ActiveIntronRegion	0	1.84	0.19	13.85	2.39	0.73	1.84	2.92
23	ER6a	ExonRegion	0	1.10	0.02	3.95	1.78	0.39	3.75	0.47
24	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER7a	ExonRegion	0	5.54	12.18	1.11	1.05	0.46	0.97	0.57
26	E7_Da	NovelBoundary	0	220.41	558.43	129.32	252.71	0.00	243.99	92.19
27	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER8a	ExonRegion	0	3.04	2.27	9.01	2.02	0.43	3.77	2.69
29	E8a_E9a	KnownJunction	0	2.69	1.10	11.40	4.01	0.00	2.20	1.50
30	ER9a	ExonRegion	0	2.65	0.12	8.37	3.22	0.36	0.89	1.26