Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MTF2	Gene	0	108.36	80.22	110.14	87.17	473.13	47.86	31.55
2	370299	Transcript	0	0	0	0	0	0	0	0
3	370298	Transcript	0	0	0	0	0	0	0	0
4	370303	Transcript	0	56.04	16.50	30.82	27.88	88.11	14.90	10.06
5	370297	Transcript	1	31.68	36.52	19.46	45.81	14.15	20.85	0.00
6	IG23_AR1	ActiveIntergenicRegion	0	0.24	0.00	9.76	1.00	0.30	2.63	0.00
7	ER1a	ExonRegion	0	94.90	45.90	73.78	58.82	261.41	33.41	22.98
8	E1a_E2a	KnownJunction	0	104.20	54.85	84.34	73.53	669.89	34.06	33.91
9	E1a_E4a	NovelJunction	1	15.97	6.52	22.58	8.48	17.64	4.42	2.12
10	I1_AR4	ActiveIntronRegion	1	0.77	0.00	1.59	5.13	3.86	10.02	0.67
11	I1_AR5	ActiveIntronRegion	1	4.02	1.76	5.53	5.38	4.27	9.95	0.16
12	ER2a	ExonRegion	0	58.71	67.48	69.05	76.30	318.92	41.85	23.53
13	E2a_E3a	KnownJunction	0	73.77	85.12	82.83	93.41	310.59	56.90	23.89
14	ER3a	ExonRegion	0	67.77	82.64	82.72	97.83	363.32	43.82	27.55
15	E3a_E4a	KnownJunction	0	84.60	89.19	76.77	87.64	308.84	26.99	32.76
16	I3_SR1	SilentIntronRegion	1	3.46	1.30	5.90	6.33	2.59	9.94	0.67
17	I3_AR2	ActiveIntronRegion	1	3.70	1.15	6.23	6.80	4.30	11.89	1.21
18	ER4a	ExonRegion	0	79.85	101.54	108.14	117.93	478.60	45.80	34.10
19	E4a_E5a	KnownJunction	0	82.45	103.17	106.90	118.79	568.87	45.43	43.68
20	E5_Aa	NovelBoundary	1	1.03	1.23	7.07	2.49	0.00	13.11	0.69
21	ER5a	ExonRegion	0	120.12	113.60	118.03	124.75	562.02	60.66	44.23
22	E5_Da	NovelBoundary	1	2.77	4.81	11.94	13.06	1.96	16.27	0.87
23	E5a_E6a	KnownJunction	0	98.44	103.40	107.66	128.87	578.14	55.23	40.87
24	E5a_E7a	NovelJunction	0	0.00	2.73	2.39	11.73	2.03	1.34	0.00
25	I5	Intron	1	4.54	1.43	9.47	8.68	2.80	19.77	1.61
26	I5_SR1	SilentIntronRegion	1	4.58	1.44	9.54	8.75	2.82	19.92	1.62
27	ER6a	ExonRegion	0	115.19	121.84	130.73	129.04	677.96	65.43	49.08
28	E6a_E7a	KnownJunction	0	134.47	122.11	127.92	114.46	627.54	38.81	39.50
29	I6	Intron	1	1.73	0.62	4.70	5.15	1.38	9.76	0.86
30	I6_SR1	SilentIntronRegion	1	1.74	0.62	4.73	5.18	1.39	9.82	0.87
31	ER7a	ExonRegion	0	153.51	129.58	152.57	142.45	773.51	44.44	56.20
32	E7_Da	NovelBoundary	1	6.74	0.00	2.69	6.23	0.00	13.05	2.67
33	E7a_E8a	KnownJunction	1	169.12	126.18	153.60	122.64	745.69	29.08	47.85
34	I7	Intron	1	3.32	1.27	5.55	7.51	0.88	10.23	0.00
35	I7_AR1	ActiveIntronRegion	1	4.53	1.39	6.76	6.16	1.25	11.68	0.00
36	ER8a	ExonRegion	0	185.32	137.77	148.39	130.59	740.81	48.68	51.41
37	E8_Da	NovelBoundary	1	8.24	3.60	12.47	8.94	16.02	19.86	1.56
38	E8a_E9a	KnownJunction	0	148.34	99.12	119.86	76.15	812.77	27.98	51.75
39	E8a_E10a	KnownJunction	1	31.68	36.52	19.46	45.81	14.15	20.85	0.00
40	I8	Intron	1	13.21	3.48	14.55	7.94	12.52	14.25	1.06
41	I8_AR1	ActiveIntronRegion	1	14.04	4.17	15.49	10.47	14.57	18.55	1.29
42	ER9a	ExonRegion	0	150.05	76.50	120.58	67.94	695.44	25.04	43.66
43	E9a_E10a	KnownJunction	0	167.13	64.37	97.30	52.15	588.93	27.39	38.38
44	I9	Intron	1	11.35	3.59	15.26	8.67	10.59	14.21	1.72
45	I9_SR1	SilentIntronRegion	1	14.27	5.27	15.29	9.12	14.02	17.71	2.43
46	I9_AR1	ActiveIntronRegion	1	8.48	2.04	14.65	10.53	10.71	14.30	1.11
47	I9_SR3	SilentIntronRegion	0	12.60	2.29	14.57	5.51	4.43	10.38	1.86
48	I9_AR4	ActiveIntronRegion	1	11.37	3.55	15.76	7.11	6.08	15.92	1.69
49	I9_SR4	SilentIntronRegion	1	14.54	4.77	19.19	11.06	13.45	17.65	2.52
50	I9_AR6	ActiveIntronRegion	1	13.61	6.70	12.77	14.62	12.80	22.37	1.98
51	E10_Aa	NovelBoundary	1	23.27	4.73	24.06	21.81	32.37	24.36	3.11
52	ER10a	ExonRegion	0	179.02	107.73	139.14	94.53	624.06	56.00	38.38
53	E10a_E11a	KnownJunction	0	89.64	76.69	100.85	63.91	457.07	32.24	24.33
54	E10a_E12a	KnownJunction	0	56.04	16.50	30.82	27.88	88.11	14.90	10.06
55	I10	Intron	0	8.67	3.30	12.30	10.40	5.66	12.04	1.45
56	I10_AR1	ActiveIntronRegion	1	7.74	2.63	12.15	8.83	5.49	11.90	0.90
57	I10_AR3	ActiveIntronRegion	0	9.66	4.63	12.64	12.66	5.86	12.87	2.10
58	ER11a	ExonRegion	0	105.94	53.15	105.56	60.34	373.62	38.15	21.82
59	E11a_E12a	KnownJunction	0	78.18	51.23	99.67	73.71	316.22	28.17	18.70
60	ER12a	ExonRegion	0	139.34	75.20	144.00	87.17	501.05	37.55	27.14
61	E12a_E13a	KnownJunction	0	113.39	75.61	110.74	89.27	459.49	36.61	16.88
62	ER13a	ExonRegion	1	141.97	75.48	129.60	88.46	468.05	44.78	18.86
63	E13a_E14a	KnownJunction	0	134.89	64.55	112.13	80.19	440.24	39.40	22.60
64	ER14a	ExonRegion	0	136.45	91.70	145.12	94.25	515.99	63.05	32.00
65	E14a_E15a	KnownJunction	0	123.76	106.69	125.81	88.02	518.16	48.40	23.66
66	I14_AR2	ActiveIntronRegion	0	8.53	9.58	9.15	9.53	5.32	10.49	2.54
67	E15_Aa	NovelBoundary	0	10.40	9.98	9.77	20.35	15.28	18.84	2.67
68	ER15a	ExonRegion	0	94.94	71.30	107.77	77.45	442.02	54.79	27.53
69	IG24	Intergenic	0	22.60	12.84	36.50	31.01	66.33	28.77	6.94
70	IG24_AR1	ActiveIntergenicRegion	0	52.77	31.73	63.83	38.12	291.30	35.48	12.98
71	IG24_SR1	SilentIntergenicRegion	0	8.86	3.47	15.42	10.43	24.12	11.04	1.84
72	IG24_AR2	ActiveIntergenicRegion	0	4.10	3.64	11.52	8.73	10.66	11.85	1.69
73	IG24_SR2	SilentIntergenicRegion	0	6.17	2.86	10.91	10.06	10.87	11.26	1.52
74	IG24_AR3	ActiveIntergenicRegion	0	7.10	4.08	15.37	12.29	7.32	20.64	1.70
75	IG24_SR3	SilentIntergenicRegion	0	3.62	1.88	13.16	12.88	2.06	13.37	1.45
76	IG24_AR4	ActiveIntergenicRegion	0	70.07	38.84	123.81	128.27	11.03	105.53	27.28