Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 DEPDC1 Gene 0 2.20 0.35 2.10 0.78 122.10 0.72 5.75 2 370964 Transcript 0 1.95 0.40 1.54 0.78 88.65 0.11 1.10 3 370962 Transcript 0 0.00 0.00 0.00 0.00 0.26 0.00 0.00 4 370966 Transcript 0 0.95 0.00 0.81 0.17 27.72 0.00 7.33 5 370965 Transcript 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.99 0.00 0.00 0.00 29.18 0.00 0.63 7 E1_Ab KnownBoundary 0 1.54 0.00 0.00 0.00 83.52 0.00 1.52 8 ER1b ExonRegion 0 0.77 0.00 0.39 0.68 53.25 0.00 1.29 9 E1a_E2a KnownJunction 0 0.00 0.00 1.81 7.83 31.86 0.00 0.89 10 ER2a ExonRegion 0 1.17 1.04 1.25 1.23 69.09 0.35 4.42 11 E2a_E3a KnownJunction 0 3.19 0.00 4.94 0.00 98.00 0.00 5.90 12 ER3a ExonRegion 0 2.80 0.00 3.14 0.00 100.40 0.00 6.69 13 E3_Da KnownBoundary 0 3.35 0.00 5.33 0.00 109.09 0.00 7.68 14 E3a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3b ExonRegion 0 2.36 0.00 1.35 0.00 153.67 0.00 10.55 16 E3_Ab KnownBoundary 0 3.67 2.68 0.86 0.00 230.21 3.11 13.18 17 ER3c ExonRegion 0 1.86 0.00 0.00 0.00 212.97 0.00 12.33 18 E3b_E4a KnownJunction 0 3.54 1.52 2.53 0.00 193.94 4.64 13.04 19 ER4a ExonRegion 0 2.93 0.00 0.50 0.00 182.62 0.78 13.68 20 E4a_E5a KnownJunction 0 6.09 0.00 3.46 1.22 232.14 8.47 13.16 21 ER5a ExonRegion 0 2.80 0.00 0.60 0.00 211.72 0.00 10.71 22 E5a_E6a KnownJunction 0 3.64 0.00 1.87 1.16 182.44 3.08 11.55 23 ER6a ExonRegion 0 3.07 0.00 1.34 0.91 184.56 0.00 11.30 24 E6a_E7a KnownJunction 0 2.80 0.00 2.47 1.68 184.56 0.00 10.92 25 ER7a ExonRegion 0 1.96 0.00 1.83 0.36 174.93 0.00 12.49 26 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.85 0.00 0.00 27 E7a_E9a KnownJunction 0 2.57 0.00 0.85 0.00 120.01 0.00 0.62 28 E7a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 11.62 0.00 12.97 29 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.47 0.00 0.00 30 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER9a ExonRegion 0 2.37 0.42 1.23 0.80 146.95 0.36 1.35 32 E9_Da KnownBoundary 0 9.70 2.31 3.77 4.66 189.29 0.00 0.00 33 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER9b ExonRegion 0 3.29 1.19 3.78 2.33 145.94 0.32 2.69 35 E9_Ab KnownBoundary 0 3.37 0.00 2.89 4.44 168.15 1.55 2.78 36 ER9c ExonRegion 0 1.31 0.60 1.31 0.33 174.80 0.91 3.70 37 E9b_E10a KnownJunction 0 0.00 4.05 5.98 1.68 148.83 3.32 4.00 38 ER10a ExonRegion 0 2.59 2.14 2.07 1.33 222.76 1.56 11.54 39 E10a_E11a KnownJunction 0 1.44 1.52 0.83 0.00 129.51 6.22 5.13 40 ER11a ExonRegion 0 3.20 0.00 2.12 0.95 123.83 0.00 6.82 41 E11_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E11a_E12a KnownJunction 0 3.30 0.00 3.29 1.52 146.64 0.00 6.13 43 ER11b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER12a ExonRegion 0 2.39 0.00 1.58 0.77 104.13 1.14 6.98 45 E12_Da NovelBoundary 0 3.30 0.00 3.62 1.19 69.99 3.91 7.05 46 E12b_E13a KnownJunction 0 4.51 0.00 1.90 0.00 129.70 1.55 8.01 47 ER12b ExonRegion 0 3.71 0.00 0.59 0.00 111.44 0.00 8.92 48 ER13a ExonRegion 0 2.57 0.19 3.33 0.94 125.49 1.41 6.80 49 E13_Da KnownBoundary 0 1.90 0.00 5.00 0.00 53.07 0.00 2.36 50 ER13b ExonRegion 0 1.90 0.00 1.62 0.34 43.83 0.00 1.69 51 IG9_AR4 ActiveIntergenicRegion 0 0.55 0.00 0.00 0.00 67.24 0.00 1.95