Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FAF1	Gene	0	132.38	99.30	247.66	244.00	202.87	49.81	197.70
2	371778	Transcript	0	4.58	0.43	2.68	7.89	0.00	0.70	0.24
3	345470	Transcript	0	3.35	2.25	7.10	5.85	4.47	1.20	5.35
4	396153	Transcript	0	0	0	0	0	0	0	0
5	371780	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	13.70	17.93	12.67	48.95	15.01	11.68	13.57
7	E1a_E2a	KnownJunction	0	137.63	105.35	176.54	168.86	166.44	42.99	93.13
8	ER1b	ExonRegion	0	113.43	89.71	135.66	160.38	143.50	46.26	79.34
9	ER2a	ExonRegion	0	125.03	136.84	194.35	262.93	175.06	59.79	123.31
10	E2a_E3a	KnownJunction	0	132.28	125.31	235.11	314.99	133.66	65.74	150.77
11	ER3a	ExonRegion	0	167.91	192.41	273.72	399.03	199.45	81.75	219.72
12	E3a_E4a	KnownJunction	0	203.20	194.75	326.36	376.59	278.46	72.04	224.85
13	ER4a	ExonRegion	0	253.80	143.84	411.35	333.14	352.05	62.02	251.89
14	E4a_E5a	KnownJunction	0	290.96	91.42	442.87	245.69	408.45	56.20	267.67
15	E4a_E6a	NovelJunction	0	2.87	8.25	4.74	9.54	1.15	1.13	0.77
16	ER5a	ExonRegion	0	307.47	141.78	554.37	377.69	406.78	81.06	344.65
17	E5a_E6a	KnownJunction	0	403.10	163.25	666.60	464.42	420.51	90.40	391.94
18	ER6a	ExonRegion	0	399.77	174.61	625.22	443.53	473.56	79.42	380.84
19	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E6a_E8a	KnownJunction	0	271.46	145.07	468.33	425.33	366.10	59.23	309.42
21	E7a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER7a	ExonRegion	0	0.00	0.00	0.10	0.00	0.00	0.00	0.00
23	E8a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER8a	ExonRegion	0	256.52	147.11	450.28	402.54	419.50	56.84	301.79
25	ER8b	ExonRegion	0	195.05	119.22	361.88	301.79	323.14	48.70	291.47
26	E8b_E9a	KnownJunction	0	192.07	113.62	375.47	293.02	356.33	48.03	275.74
27	ER9a	ExonRegion	0	138.58	114.95	313.89	277.37	313.70	44.15	242.58
28	E9a_E10a	KnownJunction	0	114.38	119.14	217.04	237.29	216.51	39.99	205.03
29	ER10a	ExonRegion	0	126.66	117.02	253.81	248.47	221.47	51.50	213.35
30	E10a_E11a	KnownJunction	0	115.54	89.48	304.62	246.85	223.77	48.16	247.73
31	ER11a	ExonRegion	0	144.27	115.57	313.03	277.31	256.54	57.08	255.39
32	E11a_E12a	KnownJunction	0	180.94	112.89	359.82	304.10	223.50	80.32	248.94
33	ER12a	ExonRegion	0	170.99	107.23	375.21	311.43	244.17	69.15	262.42
34	E12a_E13b	KnownJunction	0	158.34	94.76	328.75	292.20	197.75	59.47	239.95
35	ER12b	ExonRegion	0	162.27	101.04	345.75	287.32	212.86	56.50	251.34
36	ER13a	ExonRegion	0	13.38	9.01	28.28	23.38	17.88	4.80	21.42
37	ER13b	ExonRegion	0	162.12	102.44	329.33	251.52	224.98	59.71	265.34
38	E13a_E14a	KnownJunction	0	166.62	97.81	347.43	239.86	275.74	57.86	251.24
39	ER14a	ExonRegion	0	148.58	111.59	335.34	264.39	240.48	66.05	245.70
40	E14a_E15a	KnownJunction	0	140.58	124.92	363.31	305.40	275.18	74.18	320.22
41	ER15a	ExonRegion	0	162.23	162.05	354.86	385.43	273.89	68.53	334.39
42	E15a_E16a	KnownJunction	0	133.35	172.94	318.29	401.25	283.41	70.56	359.90
43	ER16a	ExonRegion	0	150.00	147.49	316.56	410.64	304.13	68.10	379.23
44	E16a_E17a	KnownJunction	0	154.63	133.41	275.65	393.06	260.22	50.92	328.58
45	ER17a	ExonRegion	0	159.09	142.63	281.96	372.96	271.31	58.86	369.09
46	E17a_E18a	KnownJunction	0	127.79	133.09	237.47	328.78	235.53	68.12	310.42
47	ER18a	ExonRegion	0	110.17	117.05	229.39	330.92	237.58	55.56	252.85
48	E18a_E19a	KnownJunction	0	97.85	104.17	216.60	318.05	240.63	46.60	218.50
49	ER19a	ExonRegion	0	143.54	120.19	283.64	318.65	245.96	73.10	261.85
50	E19_Da	NovelBoundary	1	49.37	8.72	99.34	4.58	0.00	0.00	2.44
51	E19a_E20a	KnownJunction	0	2.77	0.00	0.89	8.37	0.00	1.23	0.00
52	E19a_E21a	KnownJunction	0	101.51	136.38	235.56	349.50	127.57	91.07	210.57
53	ER20a	ExonRegion	0	6.39	0.85	4.47	7.41	0.00	0.17	0.47
54	ER21a	ExonRegion	0	65.06	72.60	122.35	166.03	77.11	47.75	93.64
55	ER21b	ExonRegion	0	5.52	2.65	8.44	2.38	8.98	1.23	7.11
56	IG42_AR6	ActiveIntergenicRegion	0	12.80	5.11	25.56	21.32	12.25	2.53	8.48
57	IG42_SR3	SilentIntergenicRegion	0	7.19	1.39	23.13	11.13	3.82	3.24	7.81
58	IG42_AR5	ActiveIntergenicRegion	0	5.57	3.04	26.36	10.44	3.88	3.68	7.00
59	IG42_AR4	ActiveIntergenicRegion	0	7.32	6.16	21.08	6.89	6.15	1.77	5.78
60	IG42_AR3	ActiveIntergenicRegion	0	5.53	6.35	15.46	13.69	5.32	3.06	5.86