Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FAAH	Gene	0	24.55	14.49	10.87	4.62	73.34	8.63	28.04
2	243167	Transcript	0	28.34	11.79	10.48	4.56	76.50	7.49	27.29
3	396325	Transcript	0	0.52	2.60	0.80	0.77	0.98	0.00	1.32
4	ER1a	ExonRegion	0	0.00	0.61	0.00	0.00	0.54	0.00	0.41
5	ER1b	ExonRegion	0	0.83	2.04	0.04	0.01	2.97	1.37	2.74
6	E1a_E2a	KnownJunction	1	2.00	2.89	0.50	0.00	4.36	4.34	9.04
7	ER2a	ExonRegion	0	15.64	8.80	12.23	5.66	25.63	8.06	18.85
8	E2a_E3a	KnownJunction	0	27.25	11.64	17.24	12.73	58.14	4.48	24.18
9	ER3a	ExonRegion	0	28.31	12.91	20.77	6.07	96.50	7.36	38.42
10	E3a_E4a	KnownJunction	0	25.47	11.43	21.45	9.24	58.60	13.19	23.30
11	ER4a	ExonRegion	0	28.30	18.70	16.35	5.38	73.43	6.36	31.09
12	E4a_E5a	KnownJunction	0	27.77	28.29	15.42	4.14	125.41	8.07	45.76
13	ER5a	ExonRegion	0	21.93	17.43	12.89	2.01	65.39	7.87	24.88
14	E5a_E6a	KnownJunction	0	19.38	6.52	5.07	0.00	33.84	3.08	15.02
15	E5a_E8a	KnownJunction	0	1.03	5.20	1.57	1.54	1.96	0.00	2.64
16	ER6a	ExonRegion	0	17.58	6.46	9.10	2.49	40.49	2.39	22.05
17	E6a_E7a	KnownJunction	0	23.45	8.62	8.84	5.63	47.60	1.50	24.31
18	ER7a	ExonRegion	0	35.47	6.48	10.38	4.33	75.90	5.27	31.80
19	E7a_E8a	KnownJunction	0	42.94	7.41	12.20	5.53	85.43	5.49	38.29
20	ER8a	ExonRegion	0	30.48	20.50	14.23	5.36	90.36	10.63	38.51
21	E8a_E9a	KnownJunction	0	24.30	20.81	7.53	2.76	113.10	10.56	28.38
22	E8a_E10a	NovelJunction	0	2.77	1.52	3.42	0.00	8.62	2.87	0.00
23	ER9a	ExonRegion	0	23.89	20.94	9.51	2.44	93.31	7.16	29.69
24	E9a_E10a	KnownJunction	0	24.70	10.96	9.73	0.00	69.69	3.38	36.46
25	I9	Intron	0	6.20	3.17	3.61	1.09	19.37	0.71	4.11
26	I9_SR1	SilentIntronRegion	0	6.54	4.07	3.69	1.23	20.45	0.62	4.18
27	I9_AR1	ActiveIntronRegion	0	5.61	1.41	3.48	0.83	17.42	0.92	4.02
28	ER10a	ExonRegion	0	28.46	13.87	9.38	5.20	79.20	6.08	32.91
29	E10a_E11a	KnownJunction	0	13.12	5.86	9.08	2.68	68.79	4.34	26.13
30	I10	Intron	0	7.55	4.07	3.52	2.99	22.17	3.24	6.31
31	I10_AR1	ActiveIntronRegion	0	7.60	4.09	3.54	3.00	22.30	3.26	6.35
32	E11_Aa	NovelBoundary	0	5.77	1.08	3.54	1.49	24.62	3.08	8.13
33	ER11a	ExonRegion	0	21.63	11.70	11.15	1.28	78.77	4.99	26.08
34	E11a_E13a	KnownJunction	1	23.33	20.60	9.10	0.00	84.10	3.32	20.48
35	ER12a	ExonRegion	0	0.00	0.00	0.04	0.00	0.00	0.00	0.00
36	I12	Intron	0	4.23	2.65	2.66	0.48	15.82	1.87	3.62
37	I12_SR1	SilentIntronRegion	0	3.89	2.88	2.68	0.78	14.89	0.78	3.62
38	I12_AR1	ActiveIntronRegion	0	4.63	2.40	2.65	0.15	16.94	3.08	3.64
39	E13_Aa	NovelBoundary	0	3.09	7.09	3.16	0.00	30.66	3.32	3.96
40	ER13a	ExonRegion	0	28.05	15.52	16.16	5.49	96.41	7.60	31.49
41	E13a_E14a	KnownJunction	0	30.58	10.09	16.15	9.08	102.38	10.26	30.21
42	ER14a	ExonRegion	0	27.93	16.21	12.75	5.10	107.58	10.18	32.20
43	E14a_E15a	KnownJunction	0	29.16	14.97	9.97	3.12	63.56	14.20	24.18
44	ER15a	ExonRegion	0	41.54	17.47	11.08	7.82	127.71	12.71	39.32
45	E15a_E16a	KnownJunction	0	49.69	13.95	16.37	8.02	120.70	13.24	39.91
46	ER16a	ExonRegion	0	27.72	20.11	9.57	7.18	84.69	15.61	32.38
47	IG3_AR1	ActiveIntergenicRegion	0	2.31	4.73	4.00	3.49	9.04	3.57	3.31