Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C1orf113	Gene	0	20.32	87.81	6.96	17.53	17.15	14.99	72.32
2	312808	Transcript	0	16.37	75.64	5.59	13.34	13.94	9.86	56.64
3	ER1a	ExonRegion	0	2.43	31.87	2.84	8.81	6.79	6.55	17.42
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	1	3.10	23.27	0.83	5.66	9.73	10.24	27.90
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	Ix	Intron	1	10.31	57.89	2.12	6.40	4.30	4.00	39.94
8	Ix_SR1	SilentIntronRegion	0	10.43	58.56	2.14	6.48	4.35	4.03	40.40
9	ER3a	ExonRegion	1	2.13	18.37	2.02	9.20	24.53	5.10	21.31
10	E3a_E4a	KnownJunction	0	1.99	16.71	4.17	14.03	1.84	6.91	11.79
11	E4_Aa	NovelBoundary	0	13.62	9.93	0.55	8.86	0.00	3.22	13.73
12	ER4a	ExonRegion	0	47.03	198.05	12.56	29.65	44.25	23.66	127.22
13	E4a_E5a	KnownJunction	1	53.51	204.23	13.01	40.28	29.51	15.22	133.02
14	E5_Aa	NovelBoundary	0	6.84	26.43	3.08	8.26	0.00	9.92	6.21
15	ER5a	ExonRegion	0	62.40	251.87	19.33	37.70	36.10	24.49	192.02
16	E5a_E6a	KnownJunction	0	55.24	257.43	21.71	38.23	27.36	27.39	205.08
17	E5a_E7a	NovelJunction	0	2.04	9.35	0.80	1.35	1.15	4.18	3.14
18	ER6a	ExonRegion	0	31.88	194.30	15.00	23.59	28.09	21.57	139.26
19	E6a_E7a	KnownJunction	0	4.61	7.12	2.86	1.68	0.00	6.89	15.88
20	I6	Intron	0	5.16	25.02	2.42	7.42	5.36	5.46	18.39
21	I6_SR1	SilentIntronRegion	0	1.79	25.59	3.03	8.31	3.13	5.39	13.90
22	I6_AR2	ActiveIntronRegion	1	5.33	28.94	2.86	7.77	5.49	5.79	21.11
23	ER7a	ExonRegion	0	34.86	153.63	12.22	27.40	26.39	26.65	122.15
24	E7_Da	NovelBoundary	0	3.25	25.30	1.31	4.82	1.18	1.63	15.42
25	E7a_E8a	KnownJunction	0	25.32	86.80	4.34	15.60	21.44	11.66	84.81
26	ER8a	ExonRegion	0	14.06	80.69	3.41	12.80	17.94	7.07	53.48
27	E8a_E9a	KnownJunction	0	11.00	71.77	4.22	13.00	17.89	8.12	37.96
28	E8a_E10a	NovelJunction	0	1.03	4.44	0.83	3.36	0.00	1.66	12.34
29	ER9a	ExonRegion	0	12.37	62.23	3.30	10.48	7.83	9.89	24.82
30	E9_Da	NovelBoundary	0	8.33	34.84	3.25	7.23	9.45	10.29	17.28
31	E9a_E10a	KnownJunction	0	0.00	8.49	0.86	0.00	2.12	1.37	5.99
32	I9	Intron	0	11.12	30.62	3.14	6.97	7.73	7.23	21.34
33	I9_AR1	ActiveIntronRegion	0	11.16	30.72	3.15	7.00	7.76	7.26	21.41
34	E10_Aa	NovelBoundary	0	16.59	54.88	2.82	14.71	12.93	10.21	35.80
35	ER10a	ExonRegion	0	0.73	9.81	1.00	0.00	4.59	1.20	10.56
36	E10_Da	NovelBoundary	0	11.58	27.93	5.78	13.03	13.60	6.49	43.38
37	E10a_E11a	KnownJunction	1	0.92	16.66	0.89	1.14	1.18	2.87	15.58
38	I10	Intron	0	6.51	21.54	2.71	8.25	8.08	2.59	26.86
39	I10_AR1	ActiveIntronRegion	1	6.56	21.70	2.73	8.31	8.12	2.61	27.06
40	E11_Aa	NovelBoundary	1	56.36	168.79	23.88	48.25	8.39	130.30	61.87
41	ER11a	ExonRegion	0	0.26	4.95	0.27	0.64	0.74	0.46	4.05
42	E11_Da	NovelBoundary	1	34.28	99.73	15.28	20.51	8.74	73.43	35.26
43	E11a_E12a	KnownJunction	0	0.00	4.31	0.00	2.65	0.97	0.99	5.22
44	Ix	Intron	1	5.54	8.62	1.24	2.68	1.85	2.65	14.96
45	Ix_AR1	ActiveIntronRegion	0	5.58	8.69	1.25	2.70	1.87	2.67	15.08
46	E12_Aa	NovelBoundary	1	6.63	31.32	3.77	7.59	2.10	1.66	37.30
47	ER12a	ExonRegion	0	12.64	37.07	3.74	14.17	11.22	8.54	47.19